Name: Niema Moshiri
Type: User
Company: University of California, San Diego
Bio: Niema Moshiri, Associate Teaching Professor of Computer Science, UC San Diego
Twitter: niemasd
Location: San Diego, CA, USA
Blog: https://niema.net/
Niema Moshiri's Projects
Niema's benchmarking experiment of Assembled Genomes Compressor (AGC) on viral data
Niema's scripts/notes for playing with the temporary *.baiduyun.uploading.cfg files that are created while files are being uploaded to Baidu Netdisk
bgtools: A Python package for managing playing board games
WebAssembly modules for genomics
Handbook for the Bioinformatics & Systems Biology (BISB) and Biomedical Informatics (BMI) PhD programs at UC San Diego
Stuff related to my work in updating the UCSD BISB program website
Mirror of source code for Black Chocobo, by sithlord48 and vegetass4
A Collection of Blank Video Files For Removing Intro Videos and Other
Some benchmarking of the JavaScript bloom-filters JavaScript library
Benchmark of cawlign and bealign
Installing ChromeOS Flex on an ASUS T100TA
Placeholder for TreeCluster
CoaTran: Coalescent tree simulation along a transmission network
Lightweight header-only C++ library for loading and traversing trees
Repository to store data/figures for CompactTree paper
Command line tools for processing Newick trees using CompactTree
Source code from Ficedula's Cosmo editor (version 0.91)
Niema Moshiri's Curriculum Vitae (CV)
Repository for source code of the Data Structures online textbook (Niema Moshiri and Liz Izhikevich, 2016)
Code and simulation data for "A two-state model of tree evolution and its applications to Alu retrotransposition"
O(n) simulator of trees under the Dual-Birth (and Yule) model
FAVITES (FrAmework for VIral Transmission and Evolution Simulation)
A simplified simulation pipeline specifically for ABM-HIV SD
A simplified (and much faster) simulation pipeline specifically for COVID-19 contact + transmission + phylogeny + sequence simulation
FAVITES-Lite: A lightweight framework for viral transmission and evolution simulation
Writes the correct checksum to every save slot in a Final Fantasy VII (PC?) save file
Niema's files regarding UCSD FYE (e.g. SEV 1) instruction