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Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis

Home Page: https://nicocriscuolo.shinyapps.io/StructuRly/

License: GNU General Public License v2.0

R 95.53% HiveQL 4.47%
structure admixture q tables barplots shiny triangleplot plotly population-analysis interactive-plots

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structurly's Issues

Ajax error

After uploading a large data file (300 genotype x ~14500 SNP markers) when I went for 'Start Analysis' an Ajax error appeared. I tried different browsers and the error sustained. I followed the instructions (https://datatables.net/manual/tech-notes/7) of debugging but it didn't work at all.
error
.

Error installing package using devtools::install_github() in R4.0.2

Hi Nico,

I'm getting the following error message when I try and install the package using devtools::install_github(repo = "nicocriscuolo/StructuRly", dependencies = T)

ERROR: dependency 'shinymeta' is not available for package 'StructuRly' install.packages("shinymeta")

when I try install.packages("shinymeta") it says it is not available for R4.0.2.

Do you have any idea how to solve this?

Thanks,

Maria

Admixture barplot parameters

Hello!
Thank you very much for your package!
Please tell me, is it possible to set a free size for each block when building a barplot using grouping by pop_id? The fixed size is very problematic if the number of samples between groups varies greatly.
Thank you!
With best regards, Lesya
newplot

Population Analysis

Hello,

After I imported the raw genetic data, how do I generate the csv file needed to be used for the population analysis, I noticed that the sample data files contain the StructureAnalysis.csv that has K1, K2, K3, and K4, but I am not sure where to get such a file.

Thank you so much!

huge Admxture matrix

Hello,
thank you very much for your code. I want to plot a K100 admixture matrix ..but i get obviusly alimitation in colors, please would be possible add some modification to allow this?
Thank you

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