Comments (2)
djbradshaw2
commented on July 20, 2024
1
Hi Dr. Croucher,
Thanks again for helping me!. Please see attached the full SNPs for my dataset with just the CHROM, POS, ID, REF, ALT, Reference, example isolate (short read version of the reference), and columns to sort to see which SNPs do not match between the REF and Reference columns, and the REF and example isolate. Please let me know if you would like any other information.
Thanks for your time and help,
Sincerely,
David
from gubbins.
nickjcroucher
commented on July 20, 2024
Do you have a specific example I could take a look at? Thanks!
from gubbins.
Related Issues (20)
- conda env for latest Gubbins? HOT 2
- New ska version and masking HOT 5
- Gubbins input file error HOT 1
- File names with spaces cause error HOT 2
- Conda Gubbins 3.3.3 : Not able to install HOT 3
- RuntimeError: cannot cache function 'seq_to_int' HOT 5
- Conda Gubbins 3.3.4 : Not able to install HOT 11
- Unable to install gubbin HOT 6
- Multithreading not working on v3.3 HOT 1
- Can Gubbins be used on eukaryotic genomes? HOT 1
- Pyjar causing core dump HOT 7
- Latest Gubbins installs Gubbins 2.3.4 HOT 1
- Uninstalling gubbins 3.3.5 HOT 1
- Restart from iteration 4 stopping when entering main loop for Iteration 5 HOT 5
- Does Gubbins can be used for Mycobacterium tuberculosis? HOT 5
- Buffer overflow during model fitting HOT 6
- raxmlHPC-AVX2 error HOT 4
- Making a core SNP tree to go along with final.tre HOT 3
- How to restart a gubbins run using the --resume flag HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from gubbins.