Mindboggle virtual machine setup script.

This program installs Mindboggle and dependencies, such as FreeSurfer and ANTs, in a VirtualBox virtual machine (vm) using Vagrant software, which can package the vm. You must have Vagrant (http://www.vagrantup.com) and VirtualBox (http://www.virtualbox.org) installed, as well as a good internet connection.

The Mindboggle software automates shape analysis of anatomical labels and features extracted from human brain MR image data. See http://mindboggle.info for up-to-date documentation.

There is an option to use a local installation of FreeSurfer and ANTS

• build_freesurfer
• freesurfer_dir
• build_ants
• ants_dir

• nicholsn.miniconda

Supply paths to FreeSurfer and ANTs

- hosts: servers
  roles:
     - { role: nicholsn.miniconda, miniconda_home: /miniconda }
     - {role: nicholsn.mindboggle, 
        freesurfer_dir: /usr/local/freesurfer,
        ants_dir: /usr/local/ants}

Install FreeSurfer and ANTs

- hosts: servers
  roles:
     - { role: nicholsn.miniconda, miniconda_home: /miniconda }
     - {role: nicholsn.mindboggle, 
        build_freesurfer: True,
        build_ants: True}

Apache 2.0

Nolan Nichols [email protected]