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north-app's Introduction

Hi there 👋, my No.Visitor Count vistor!

About Me

  • I'm currently a CS PhD Student at Purdue University.
  • I received my BSc (EEE) and MSc (CSE) degree from Bangladesh University of Engineering and Technology.
  • My interests include Computer Vision, Biomedical Image and Signal Processing, Bioinformatics
  • Feel free to contact me: [email protected]

🛠  Tech Stack

Python  JavaScript  Java  C  C++  R (Statistics)
React  Node.js  Django  Flask  Bootstrap
HTML  CSS  Git  GitHub  Markdown
Visual Studio Code  RStudio  Eclipse

⚙️  GitHub Analytics

north-app's People

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north-app's Issues

Error at npm start

Hi,

I was trying to install NORTH on linux. An error occurred when I run "npm start" with reporting "Failed at the [email protected] start script 'electron .'" The npm-debug.log shows:

0 info it worked if it ends with ok
1 verbose cli [ '/usr/bin/node', '/usr/bin/npm', 'start' ]
2 info using [email protected]
3 info using [email protected]
4 verbose run-script [ 'prestart', 'start', 'poststart' ]
5 info lifecycle [email protected]~prestart: [email protected]
6 silly lifecycle [email protected]~prestart: no script for prestart, continuing
7 info lifecycle [email protected]~start: [email protected]
8 verbose lifecycle [email protected]~start: unsafe-perm in lifecycle true
9 verbose lifecycle [email protected]~start: PATH: /usr/lib/node_modules/npm/bin/node-gyp-bin:/home/kuokuo/softwares/NORTH-app/node_modules/.bin:/home/kuokuo/anaconda3/bin:/home/kuokuo/anaconda3/condabin:/usr/local/rvm/gems/ruby-2.3.3/bin:/usr/local/rvm/gems/ruby-2.3.3@global/bin:/usr/local/rvm/rubies/ruby-2.3.3/bin:/usr/local/share/applications/R-3.4.3/bin:/home/kuokuo/perl5/bin:/usr/local/share/applications/exfat/fuse/bin:/usr/local/share/applications/exfat/fuse/bin:/usr/local/share/applications/exfat/fuse/bin:/usr/java/jdk1.8.0_151/bin:/usr/local/diamond-master:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/local/rvm/bin:/home/kuokuo/.local/bin:/home/kuokuo/bin:/home/kuokuo/softwares:/home/kuokuo/softwares/ncbi-blast-2.10.0+/bin:/home/kuokuo/softwares/ParaAT2.0:/home/kuokuo/softwares/KaKs_Calculator2.0/src:/home/kuokuo/softwares/MCScanX/downstream_analyses:/home/kuokuo/softwares/MCScanX:/home/kuokuo/softwares/tanghaibao-mcscan-4cfe0f5:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/root/bin:/home/kuokuo/anaconda3/bin:/home/kuokuo/softwares/cafehahnlab-code2/cafe
10 verbose lifecycle [email protected]~start: CWD: /home/kuokuo/softwares/NORTH-app
11 silly lifecycle [email protected]~start: Args: [ '-c', 'electron .' ]
12 info lifecycle [email protected]~start: Failed to exec start script
13 verbose stack Error: [email protected] start: `electron .`
13 verbose stack spawn ENOENT
13 verbose stack     at ChildProcess.<anonymous> (/usr/lib/node_modules/npm/lib/utils/spawn.js:33:16)
13 verbose stack     at emitTwo (events.js:106:13)
13 verbose stack     at ChildProcess.emit (events.js:191:7)
13 verbose stack     at maybeClose (internal/child_process.js:920:16)
13 verbose stack     at Process.ChildProcess._handle.onexit (internal/child_process.js:230:5)
14 verbose pkgid [email protected]
15 verbose cwd /home/kuokuo/softwares/NORTH-app
16 error Linux 3.10.0-693.11.6.el7.x86_64
17 error argv "/usr/bin/node" "/usr/bin/npm" "start"
18 error node v6.17.1
19 error npm  v3.10.10
20 error file sh
21 error code ELIFECYCLE
22 error errno ENOENT
23 error syscall spawn
24 error [email protected] start: `electron .`
24 error spawn ENOENT
25 error Failed at the [email protected] start script 'electron .'.
25 error Make sure you have the latest version of node.js and npm installed.
25 error If you do, this is most likely a problem with the NORTH package,
25 error not with npm itself.
25 error Tell the author that this fails on your system:
25 error     electron .
25 error You can get information on how to open an issue for this project with:
25 error     npm bugs NORTH
25 error Or if that isn't available, you can get their info via:
25 error     npm owner ls NORTH
25 error There is likely additional logging output above.
26 verbose exit [ 1, true ]

My system is CentOS Linux release 7.4.1708. May I ask what is the possible problem? Many thanks in advance!

NORTH-app only shows progress bar

Hi,
I tried NORTH-app and I only got a description of NORTH and a progress bar. NORTH-app is running for a 1h and the progress bar did not disappear on my Debian (testing) environment.

Is it possible that I miss anything?

Thank you in advance,

Michal
Screen Shot 2019-04-03 at 7 06 41 PM

Error: ENOENT: no such file or directory

Hi,
I uploaded to NORTH-app a fasta file but I did not have any outliners.fasta file. When I clicked on start training to the next step

Screen Shot 2019-04-18 at 9 02 11 am
Screen Shot 2019-04-18 at 9 02 45 am

I got the below errors:

  errno: -2,
  syscall: 'open',
  code: 'ENOENT',
  path: '/home/geneious/projects/NORTH-app/tempdata/phase1_4.json' }
{ Error: ENOENT: no such file or directory, open '/home/geneious/projects/NORTH-app/tempdata/phase1_4.json'
    at Object.openSync (fs.js:436:3)
    at Object.module.(anonymous function) [as openSync] (ELECTRON_ASAR.js:160:31)
    at Object.readFileSync (fs.js:341:35)
    at Object.fs.readFileSync (ELECTRON_ASAR.js:580:40)
    at app.get (/home/geneious/projects/NORTH-app/express_app.js:33:27)
    at Layer.handle [as handle_request] (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/layer.js:95:5)
    at next (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/route.js:137:13)
    at Route.dispatch (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/route.js:112:3)
    at Layer.handle [as handle_request] (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/layer.js:95:5)
    at /home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/index.js:281:22
    at Function.process_params (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/index.js:335:12)
    at next (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/index.js:275:10)
    at next (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/route.js:127:14)
    at next (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/route.js:131:14)
    at next (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/route.js:131:14)
    at next (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/route.js:131:14)
    at next (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/route.js:131:14)
    at next (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/route.js:131:14)
    at next (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/route.js:131:14)
    at next (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/route.js:131:14)
    at next (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/route.js:131:14)
    at next (/home/geneious/projects/NORTH-app/node_modules/.registry.npmjs.org/express/4.16.4/node_modules/express/lib/router/route.js:131:14)
  errno: -2,
  syscall: 'open',
  code: 'ENOENT',
  path: '/home/geneious/projects/NORTH-app/tempdata/phase1_4.json' }

What did I miss?

Thank you in advance.

Michal

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