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Related Issues (20)
- Best match 16S type strain record in ya16sdb web interface does not match data in NGS16S output HOT 2
- Records dropped as duplicates but then 'added back' as types are absent from named_type_hits output HOT 2
- Add ANI tax check data to Dash app HOT 1
- bin/match_hits.py look top hit within same species HOT 1
- Investigate updating the Dash app html table into a DataTable
- Use the labmed classifier to illustrate species uncertainty in Dash app HOT 2
- gateway timeouts HOT 2
- Checking my understanding of the 'type_classification' column in the new interface HOT 2
- Create a Dash Datatable to visualize seq_info.feather file
- migrate to ECS HOT 5
- Type strain record present in latest NCBI_16S build not visible on https://ya16sdb.labmed.uw.edu/
- update pipeline Docker file to use python 3.11 and bookworm base
- requirements.txt should pin all dependencies
- Slurm compatibility
- Web interface https://ya16sdb.labmed.uw.edu/ not operative? HOT 2
- Add --{negative}-taxid support to Blast database(s)
- Option to visualize sequence distribution without the outliers in the web interface HOT 1
- Manuscript outline HOT 1
- Methods outline HOT 1
- Apply for an Amazon Open Data Sponsorship s3 bucket
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