crosenth Goto Github PK
Name: Chris Rosenthal
Type: User
Company: UW Laboratory Medicine
Location: Seattle, WA
Chris Rosenthal's Projects
alnvu
Reformat and condense multiple sequence alignments to highlight variability
aws_batch
Moves data to and from AWS Batch system and monitors logs
bioinformatics
Bioinformatics scripts and notes
bioy
csvpandas
Interface to manipulate csv files as Pandas DataFrames.
dendropy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
dnaj
Creation of a dnaJ reference database
docker
docker-kraken2
Kraken2 with reference database
dotfiles
My env configs
epa-ng
Massively parallel phylogenetic placement of genetic sequences
explate
Generic Python experiment analysis template.
infernal_docker
http://eddylab.org/
medirect
multiprocessed ncbi edirect
moose
dna/rna alignment classifier
moose_chrome
Chrome extension for Moose Classifier
resume
My résumé
rrat
Ribosomal RNA Allele Tree
scons_batch
SCons Aws Batch plugin
sra_submission
SRA, Bioproject and Biosample walk through with accompanying scripts
taxmagick
Tools for managing ncbi taxonomic data
ya16sdb-dash
Dash app for the ya16sdb reference database
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