💻 We now have a single-page-application web app, testing and feedback are very welcome 😃
Please use arcCommander version 0.2.1 to create the JSON to convert
A prototype of ARC to ENA converter with docker image
requirement: python3.10 is required for xml support.

• basic usage: python3.10 ena-converter.py
• arguments:
  -a <json file from arc>
  -m <mapping file>
  example: python3 ena-converter.py -a inv.json -m mapping_ERC000037.xlsx

to test the converter, you can run it in the docker with prepared dockerfile Following commandlines can be used to build and run the docker image/container

• Build: docker build --tag arc2repo .
• Run: docker run -d --name a2r arc2repo
• Copy the file to local: sudo docker cp a2r:/arc2repo .

You can also modify the input argument of the python script from docker commands, for example:

• Run: docker run -d --name a2r arc2repo python3 ena-converter.py -a inv.json -m mapping_ERC000037.xlsx

inv.json is a output of ARCcommander See explaination here nfdi4plants/ARCCommander#66 arc export exports full arc as investigation.json

STUDY.XML is one of the accepted file of ENA See explaination here https://www.ebi.ac.uk/ena/browser/submit To access the generated files, you could use sudo docker cp a2r:/arc2repo . to copy them from the docker container.