Comments (6)
+1 I also encountered this error
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The DSLv2 rewrite is almost ready -- please have a look at the dsl2
branch of this pipeline that should cover a large portion of the pipeline updates and also ffix this 👍🏻
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It should - I fear I have to really sit down with this pipeline a couple of times more to fix some of the issues we have. Currently quite swamped with other things unfortunately, so if someone wants to have a go :-)
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I'm also running into this.
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Same here.
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Fixed in dev
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Related Issues (20)
- Avoid error on unknown headers in input.csv HOT 4
- Issues with samplesheet.csv as well as additional columns in the samplesheet HOT 3
- Samplesheet Check Bug HOT 1
- Flexible input read format with STARsolo with --soloBarcodeReadLength HOT 1
- Make scrnaseq pipeline v2.5.1 compatible with nextflow v22.04.0 HOT 1
- Clean up mtx conversion code
- Update to the latest simpleaf HOT 3
- allow use of .gz when specifying fast and gtf HOT 5
- Use compressed (gzip) fasta and gtf HOT 3
- cellranger_count.py: remove any existing output directory HOT 3
- Update cellranger modules to latest nf-core/modules versions HOT 1
- cellranger mkref with multiple species
- allow for extra columns in the sample sheet HOT 1
- Sample merging does not work if files are named the same
- 'star' in genome configrations ignored HOT 2
- Cellranger mkref resource flags incorrect HOT 3
- Error with CONCAT_H5AD HOT 3
- Running 'cellranger-arc count' with existing genome index
- cellranger-multi implementation follow-up
- Trimming R1 fast files in all aligners HOT 4
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