Comments (1)
Since the nf-core template version 2.9 Nextflow 23.04 is officially required. This was probably mostly due to introducing the nf-validation
plugin which is not used by this pipeline yet.
Have you tried just removing this line from the nextflow.config?
Line 274 in 90cb6a4
We will, however, not try to support older versions of nextflow, therefore, I'm closing this ticket. If you need more help getting to run this on legacy systems, I think slack is the better place to ask for help.
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Related Issues (20)
- The cellrangerarc cannot start successfully HOT 2
- When aligner is cellrangerarc the step MTX_TO_SEURAT failed HOT 3
- Avoid error on unknown headers in input.csv HOT 4
- Issues with samplesheet.csv as well as additional columns in the samplesheet HOT 3
- Samplesheet Check Bug HOT 1
- Flexible input read format with STARsolo with --soloBarcodeReadLength HOT 1
- Clean up mtx conversion code
- Update to the latest simpleaf HOT 3
- allow use of .gz when specifying fast and gtf HOT 5
- Use compressed (gzip) fasta and gtf HOT 3
- cellranger_count.py: remove any existing output directory HOT 3
- Update cellranger modules to latest nf-core/modules versions HOT 1
- cellranger mkref with multiple species
- allow for extra columns in the sample sheet HOT 1
- Sample merging does not work if files are named the same
- 'star' in genome configrations ignored HOT 2
- Cellranger mkref resource flags incorrect HOT 3
- Error with CONCAT_H5AD HOT 3
- Running 'cellranger-arc count' with existing genome index
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