Related Issues (20)
- Bedtools sort output isn't deterministic
- BEDTOOLS_INTERSECT_FILTER is not invoked before accessing the output attribute in release version HOT 3
- Error executing process > 'NFCORE_NASCENT:NASCENT:ALIGN_BWA:BWA_MEM (1)'
- Clean up Multiqc channels
- test_full profile is broken
- "ERROR ~ fromIndex = -1" during samtools sort step HOT 6
- Add in nf-validation for samplesheet HOT 2
- Flipped bigwig strands in PROseq samples HOT 2
- Which assay type (GRO-seq, PRO-seq ... etc) should I use for EU-seq? HOT 1
- Issues of creating BWA index with custom fasta and GTF
- Test results say chr22 when the ref is chr21?
- Discrepancy between bigwigs generated by bedtools and deeptools
- Saving BWA MEM log
- Consider Scatter Gather for processing speed
- Issue with concatenation of technical replicates
- Flakey test
- Support not pooling reads for HOMER
- Sample names must contain at least underscore (?) HOT 1
- v.2.2.0 fails on multiple replicates of the same sample HOT 3
- Improve reporting when no transcripts are found
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