Comments (2)
Could you expand on this a little please? Is differentialabundance correcting the sample names in some files and not others, causing the validation to fail?
from differentialabundance.
Is differentialabundance correcting the sample names in some files and not others, causing the validation to fail?
Yes, at least the same names in salmon.merged.gene_lengths.tsv
are modified so that dashes are converted to dots ('-' => '.'
). It would be helpful if the sample naming was standardized across all output (e.g., add a sample renaming process to the start of the pipeline).
from differentialabundance.
Related Issues (20)
- Remove parameter --gsea_run HOT 1
- URGENT: pin nf-validation version HOT 2
- Dev version: On parameters website list parameter gene_sets_files in section GSEA HOT 1
- Name of blocking variable not correctly recognized HOT 7
- Continuous covariates HOT 6
- Please pin the version of the nf-validation plugin! HOT 1
- Error with samplesheet.csv with two column headers that have prefix in common HOT 8
- release differentialabundance HOT 1
- Process `NFCORE_DIFFERENTIALABUNDANCE:DIFFERENTIALABUNDANCE:GTF_TO_TABLE (gencode)` terminated with an error exit status (125) HOT 4
- Error in TABULAR_TO_GSEA_CHIP HOT 1
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- Normalized/Raw data mishap on the report HOT 1
- Provide a parameter to disable rmarkdown report creation in the differential abundance pipeline HOT 2
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