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Bioinformatics-applications

Code containing R, perl, python bash and awk applications for simple tasks in bioinformatics All the code is commented and described in Spanish

Codigo Descripcion Lng
blasting_and_plottingGBK.py Program to format a number of genes from GeneBank that are before and after in the context of the locus, or by using an optional pblast python, awk, bash
enzyme_restriction.py Program that detects restriction sites in imported sequence, returns the number of fragments and their length. python
awk_on_gene_expression_data Several exercises on awk operating on gene expression data awk
proteome_blastp.py Performs blastp analysis, muscle alignment and trees over proteins of subject proteomes downloaded using a urls_file with a query protein python, awk, bash
string_mappings.sh Gets mappings of STRINGdb to UNIPROT identifiers for proteins of a single species bash
uniprot_mappings.sh Gets all annotated mappings of UNIPROT identifiers for the proteome of a species bash
retrievalRNA.sh Retrieves ncRNA from an old annotation file bash

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