parallel not found about nsnsdacoustics HOT 9 CLOSED

Should be fixed with this: 7d05a35

from nsnsdacoustics.

Thank you for quickly fixing.

I updated the latest codes. But I got a new problem. The audio files are generated as the suggestion in the documents. And the python is 3.8.0 and Numpy is 1.20

birdnet_analyzer(audio.directory = 'C:/Users/xxxxx/Documents/example-audio-directory',

•              results.directory = 'C:/Users/xxxxx/Documents/example-results-directory',
  

•              birdnet.directory = 'C:/Program Files/BirdNET-Analyzer-main',
  

•              use.week=TRUE,
  

•              lat = 46.09924,
  

•              lon = -123.8765)
  

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Working on 2 of 2: Rivendell_20210623_114602.wav

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2 files could not be processed. Possible reasons: there is an issue with the audio file itself (corrupt, too short), a txt or csv file with the same name was open at the time of running the function, you are processing audio data from an external hard drive and there is an issue with response, or there is an error in your BirdNET -> Python -> Reticulate setup.
See list of unprocessed files here: C:/Users/yinge/Documents/example-results-directory/BirdNET_Problem-Files_example-audio-directory_2022-11-07 135627.csv

Returning error list...

ImportError:

IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

Importing the numpy C-extensions failed. This error can happen for
many reasons, often due to issues with your setup or how NumPy was
installed.

We have compiled some common reasons and troubleshooting tips at:

https://numpy.org/devdocs/user/troubleshooting-importerror.html

Please note and check the following:

• The Python version is: Python3.8 from "C:/Users/yinge/.conda/envs/pybirdanalyze/python.exe"
• The NumPy version is: "1.20.3"

and make sure that they are the versions you expect.
Please carefully study the documentation linked above for further help.

Original error was: DLL load failed while importing _multiarray_umath: The specified module could not be found.

py_run_file_impl(file, local, convert)

FINISHED! Results for each audio file are saved in C:/Users/xxxx/Documents/example-results-directory/ with the suffix .BirdNET.results.csv

from nsnsdacoustics.

Based on that "ImportError" message (which comes from Python) it looks like the issue is with the numpy version. Numpy should be 1.20, but this error seems to suggest you are running 1.20.3. Dealing with Python's dependencies is definitely a pain, and it will be nearly impossible for me to diagnose issues with the Python setup, unfortunately.

What you can try as an alternative is to see if you can get BirdNET to run from the command line, rather than via birdnet_analyzer(). (This may be preferable anyway since you'll be able to specify the number of threads and process files faster.)

If you want to try running from command line, and you're on a Windows machine, you'd find those instructions here: https://github.com/kahst/BirdNET-Analyzer#setup-windows ==> skip the first part and scroll down to "For more advanced use cases (e.g., hosting your own API server), follow these steps to set up BirdNET-Analyzer on your Windows machine:" and follow directions from there based on your preferences. Then, you'll look at the examples under "Usage" and see if you can run any of those examples from the command prompt.

I'm sorry I can't be more helpful!

Edited to add: if you ARE successful in running BirdNET from the command line, note that you can still use the R functions in NSNSDAcoustics for gathering and visualizing BirdNET results, but you'll just need to make sure you specified --rtype "r" in your command line input.

from nsnsdacoustics.

Thank for your information. Yes. the command line do work. It will be nice if this could work at R studio.

from nsnsdacoustics.

It's great the command line works. I wish I could help, but I'm not able to reproduce the issue. Your code looks correct. What is your output when you run: py_config() ?

from nsnsdacoustics.

py_config()
python: C:/Users/xxxxx/.conda/envs/pybirdanalyze/python.exe
libpython: C:/Users/xxxx/.conda/envs/pybirdanalyze/python38.dll
pythonhome: C:/Users/xxxx/.conda/envs/pybirdanalyze
version: 3.8.0 (default, Nov 6 2019, 16:00:02) [MSC v.1916 64 bit (AMD64)]
Architecture: 64bit
numpy: C:/Users/xxxx/.conda/envs/pybirdanalyze/Lib/site-packages/numpy
numpy_version: 1.20.3

NOTE: Python version was forced by RETICULATE_PYTHON

from nsnsdacoustics.

Thanks. It looks a little different than mine (below), although numpy version is the same so we can probably rule that out. I am running this on Windows, and won't have any insight outside of that environment. I also noticed that your py_config() is pointing to a '.conda' folder, whereas mine points to an Anaconda3 folder. It looks like you are running an older installation of Anaconda (?) (and python, although 3.8 should be fine for BirdNET?), which could be another place to look for the issue? I'm not sure.

py_config()
python: C:/Users/xxxxx/Anaconda3/envs/pybirdanalyze/python.exe
libpython: C:/Users/xxxxx/Anaconda3/envs/pybirdanalyze/python39.dll
pythonhome: C:/Users/xxxxx/Anaconda3/envs/pybirdanalyze
version: 3.9.12 | packaged by conda-forge | (main, Mar 24 2022, 23:17:03) [MSC v.1929 64 bit (AMD64)]
Architecture: 64bit
numpy: C:/Users/xxxxx/Anaconda3/envs/pybirdanalyze/Lib/site-packages/numpy
numpy_version: 1.20.3

NOTE: Python version was forced by use_python function

from nsnsdacoustics.

We have all re-installed and set up the proper permission for the pybirdanalyze folder. Everything is running well now.
Thank you! Cathleen!

from nsnsdacoustics.

Hooray! Best of luck and hope it's useful.

from nsnsdacoustics.