Problems settting up Katuali about katuali HOT 7 CLOSED

IN_POMOXIS: "~/home/duncan/pomoxis/venv/bin/activate"

IN_POMOXIS: "~/pomoxis/venv/bin/activate"

DATA:
    'home/duncan/katuali/test/MinIonRun1': 
        'GENOME_SIZE': '4.8M'
        'MEDAKA_TRAIN_REGIONS': ['ecoli', 'yeast']
        'MEDAKA_EVAL_REGIONS': []
        'REFERENCE': 'home/duncan/katuali/test/MinIonRun1/ref.fasta'

DATA:
    '/home/duncan/katuali/test/MinIonRun1': 
        'GENOME_SIZE': '4.8M'
        'MEDAKA_TRAIN_REGIONS': ['ecoli', 'yeast']
        'MEDAKA_EVAL_REGIONS': []
        'REFERENCE': '/home/duncan/katuali/test/MinIonRun1/ref.fasta'

# It looks like you haven't modified from the defaults, you may wish to do so
IN_MEDAKA: "~/git/medaka/venv/bin/activate"  # medaka used for consensus - should only have tensorflow installed
IN_MEDAKA_GPU: "~/git/medaka_gpu/venv/bin/activate"  # medaka used for training - should have tensorflow-gpu installed

IN_POMOXIS: "/home/duncan/pomoxis/venv/bin/activate"
# this one is not publically available and not required for most workflows
IN_RAY: "~/git/ray/venv/bin/activate"
CANU_EXEC: "/home/duncan/canu/Linux-amd64/bin/canu"
NANOPOLISH: "/home/duncan/nanopolish" 
SCRAPPIE: "/home/duncan/scrappie/build/scrappie"
# this one doesn't seem in keeping with you other paths but I trust it is correct
FLAPPIE: "~/git/github/flappie"
# have you installed guppy from source? on ubuntu from apt, this would ordinarily be
# set as in the default config
GUPPY: "/home/duncan/ont-guppy/bin/guppy_basecaller"
SOURCE: "source"
LD_LIBRARY_PATH: ""  # set this for e.g. CUDA library path```

Dynamic output is deprecated in favor of checkpoints (see docs). It will be removed in Snakemake 6.0.
Dynamic output is deprecated in favor of checkpoints (see docs). It will be removed in Snakemake 6.0.
Dynamic output is deprecated in favor of checkpoints (see docs). It will be removed in Snakemake 6.0.
Building DAG of jobs...
MissingInputException in line 154 of /home/duncan/katuali/venv/lib/python3.6/site-packages/katuali-0.2.0-py3.6.egg/katuali/data/Snakefile:
Missing input files for rule basecall_guppy:
/home/duncan/pomoxis/venv/bin/activate