Feature request: split_on_adapter print each alignment within a read that results in a split (multiple splits) about duplex-tools HOT 5 OPEN

We could consider doing this, it'll be a bit hairy since it's using multiple processes

from duplex-tools.

How you would use the output though? It can often be a pain to parse alignment that's dumped as ascii. Perhaps it would be better to have a table of matches? Would that be better/useful?

from duplex-tools.

It is useful to have an entire record of where and how close the alignments are for all hits as opposed to the first hit in the case of multiple splits.

At least the position, start, and end would be good to have for each alignment that meets the edit distance threshold for each read. Can then extract these sequences myself from the original input read to look at the alignment.

from duplex-tools.

Makes sense, I've made a MR internally that should be looked through quite soon

from duplex-tools.

Makes sense, I've made a MR internally that should be looked through quite soon

Thanks!

from duplex-tools.