Comments (8)
Also, can you check that the requirements.txt is up to date and complete? The list of requirements in the readthedocs should also match the requirements.txt.
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@childers I used the dependencies included in requirements.txt
when I set up the environment on my mac, so I think it's up-to-date and complete.
@ifishlin Can you confirm that the content of requirements.txt
is up-to-date and complete again? I afraid that there are some packages doesn't specify in that file and I haven't used the functionalities related to them, so I won't find issues about that.
from genomics-workspace.
This should be completed with pull request #30. Closing
from genomics-workspace.
Sorry, @childers I think we didn't remove the requirements_new.txt
.
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The two files do differ slightly.
@ifishlin @hsiaoyi0504
Can you verify that the information in requirements-new.txt is not needed?
from genomics-workspace.
The screenshot of vimdiff
of these two files is here.
The left side is for requirement.txt
and the right side is for requirements-new.txt
I do use the dependency specified in requirement.txt
to install my environment.
I think I can test if celery 3.1.23
works, but I am not familiar with how djangorestframework
and django-suit
work on our project. Do you have any idea about them? @ifishlin
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@ifishlin tell me that he thinks djangorestframework
and django-suit
are both need in our project and they should work even for newer version. I will create a PR based on this.
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@hsiaoyi0504 Removed the extra requirements-new.txt, and closing
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Related Issues (20)
- Re-written [BLAST query page] by React JS library HOT 5
- [BLAST query page] Organism display order HOT 1
- Final step to Integrate the adding organism functionality to CWL and fix CI issue HOT 3
- All feature under manage.py command HOT 3
- Do we need the sequences table? HOT 1
- Adding delete feature to script HOT 2
- Test if linkouts appear when ENABLE_JBROWSE_INTEGRATION = False HOT 1
- add CLI function to set is_shown HOT 3
- The blast_sequence table is big and only getting bigger HOT 10
- Moving docker version to the new repo
- vulnerabilities of django 1.11.20 and update blastdbcmd argument HOT 3
- Update readthedocs with command line interface documentation
- Consider truncating BLAST results when they are too large
- manage.py addOrganism capitalizes the short_name entry
- Using dbtitle in blast-results.js is awkward
- disable travis CI HOT 1
- Problems with multiple space characters in organism name
- google analytics code is missing
- change draggableBlastFeature to draggableNeatBlastFeature HOT 1
- Add Apollo link-outs to transcript and protein features HOT 1
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