This is the main project for the EAGER project, with links to some tutorials, subsequent tools and HowTos and a FAQ which will be updated once we get feedback from end users. Please use the different bug trackers for other tools than the actual pipeline, e.g. the Clip&Merge issue tracking if you encounter issues with the Clip&Merge application.
Wiki: https://lambda.informatik.uni-tuebingen.de/eagerwiki/
FAQ: https://lambda.informatik.uni-tuebingen.de/eagerwiki/doku.php?id=faq
Installation: https://lambda.informatik.uni-tuebingen.de/eagerwiki/doku.php?id=installation
Issues: https://github.com/apeltzer/EAGER-GUI/issues
Tools that we contributed ourselves are all (same as the EAGER Pipeline) available under a GPLv3 license on GitHub:
- EAGER-CLI
- EAGER-GUI
- EAGER-lib
- ClipAndMerge
- CircularMapper
- DeDup
- VCF2Genome
- ReportTable
- MTNucRatioCalculator
- MergedReadExtractor
Contact me via GitHub or via e-Mail [email protected] for questions.