... and add it to all the github and documentation thingys.

I should be able to pip install ect.

This also involves setting up the master branch to be protected, and to have the lovely automatic pushing to pypi thing that we have working for teaspoon and cereeberus

Dan has data where he wants 0 in different directions

Need to add lots of example code blocks and/or notebooks. In particular, a really basic running example is

import ect.ect_on_graphs as ECTg

Build a graph and plot it:

G = ECTg.create_example_graph()
G.plot()

Calculate the ECT and plot it

myect = ECTg.ECT(8,10)
myect.calculateECT(G)
myect.plotECT()

It needs stuff

Not sure how exactly we want to do this but need to figure out how/where to incorporate the other version of the ECT code floating around. Also means we can figure out exactly why we're getting different outputs from the two

Add something to the plot command for big graphs. Maybe a "plot only the edges" version for Sarah's leaf example

I tried to add it here: .github/workflows/python-publish-test.yml

Doesn't work.

Set up a command to rescale the embedded graphs to fit in a radius 1 disk

Looks like pull requests might make the package try to push to pypi

This shouldn't happen. Maybe the goal is to have it push to the test-pypi, but then the push to pypi should only happen when the branch is pulled into main

I'm trying to get latex show up in the autodocumentation.

I can get math in the main markdown files by writing the following

  Testing {math}`a^2 + b^2 = c^2` with some text 
  
  An inline text shows up like
  '''{math}
  a^2 + b^2 = c^2
  '''
  although the three slashes need to be the ` near the 1 key but that won't render in this format.

However, everything I've tried when I've put the math stuff inside of the .py files for the autodocumentation does not render as math. You can see lots of examples of this not working in the top of the ect on graphs documentation page. This code is rendered from the documentation in the top of the ect_graph.py class.

Pretty sure I've had this issue in teaspoon too so maybe once we fix it here we can get that fixed too.

If you have a lot of ECT graphs, just get a max for all of them and then maybe set the internal bounding radius value