Hello @MrTomRod,
I have been trying to run scoary2 for a long time now. For some strange reason, scoary2 will throw up a columns missing error. I have literally copy pasted the names in the traits file to the gene presence absence file. Why is this happening? I have pasted the error here for your ready reference.
Cheers,
Arun Sai.
cols_missing={'A58', 'A131', 'A49', 'A147', 'A134', 'A113', 'A46', 'A53', 'A65', 'A117', 'A41', 'A75', 'A25', 'A83', 'A92', 'A12', 'A56', 'A59', 'A118', 'A132', 'A150', 'A51', 'A97', 'A32', 'A119', 'A23', 'A112', 'A72', 'A61', 'A68', 'A136', 'A96', 'A105', 'A43', 'A22', 'A101', 'A129', 'A2', 'A94', 'A116', 'A145', 'A37', 'A104', 'A88', 'A143', 'A8', 'A86', 'A26', 'A62', 'A144', 'A57', 'A149', 'A13', 'A63', 'A67', 'A9', 'A29', 'A142', 'A3', 'A15', 'A33', 'A107', 'A93', 'A74', 'A100', 'A78', 'A31', 'A89', 'A84', 'A98', 'A16', 'A139', 'A111', 'A120', 'A39', 'A4', 'A146', 'A45', 'A151', 'A121', 'A99', 'A36', 'A20', 'A77', 'A27', 'A87', 'A52', 'A109', 'A55', 'A6', 'A11', 'A40', 'A110', 'A73', 'A124', 'A141', 'A80', 'A64', 'A28', 'A30', 'A130', 'A95', 'A90', 'A138', 'A5', 'A127', 'A66', 'A21', 'A85', 'A79', 'A137', 'A17', 'A91', 'A81', 'A103', 'A35', 'A14', 'A18', 'A19', 'A54', 'A24', 'A133', 'A1', 'A44', 'A114', 'A82', 'A140', 'A106', 'A42', 'A125', 'A70', 'A38', 'A108', 'A47', 'A115', 'A122', 'A48', 'A102', 'A71', 'A10', 'A76', 'A69', 'A50', 'A34', 'A148', 'A126', 'A135', 'A7', 'A128', 'A60', 'A123'}
restrict_to={'A58', 'A131', 'A49', 'A147', 'A134', 'A113', 'A46', 'A53', 'A65', 'A117', 'A41', 'A75', 'A25', 'A83', 'A92', 'A12', 'A56', 'A59', 'A118', 'A132', 'A150', 'A51', 'A97', 'A32', 'A119', 'A23', 'A112', 'A72', 'A61', 'A68', 'A136', 'A96', 'A105', 'A43', 'A22', 'A101', 'A129', 'A2', 'A94', 'A116', 'A145', 'A37', 'A104', 'A88', 'A143', 'A8', 'A86', 'A26', 'A62', 'A144', 'A57', 'A149', 'A13', 'A63', 'A67', 'A9', 'A29', 'A142', 'A3', 'A15', 'A33', 'A107', 'A93', 'A74', 'A100', 'A78', 'A31', 'A89', 'A84', 'A98', 'A16', 'A139', 'A111', 'A120', 'A39', 'A4', 'A146', 'A45', 'A151', 'A121', 'A99', 'A36', 'A20', 'A77', 'A27', 'A87', 'A52', 'A109', 'A55', 'A6', 'A11', 'A40', 'A110', 'A73', 'A124', 'A141', 'A80', 'A64', 'A28', 'A30', 'A130', 'A95', 'A90', 'A138', 'A5', 'A127', 'A66', 'A21', 'A85', 'A79', 'A137', 'A17', 'A91', 'A81', 'A103', 'A35', 'A14', 'A18', 'A19', 'A54', 'A24', 'A133', 'A1', 'A44', 'A114', 'A82', 'A140', 'A106', 'A42', 'A125', 'A70', 'A38', 'A108', 'A47', 'A115', 'A122', 'A48', 'A102', 'A71', 'A10', 'A76', 'A69', 'A50', 'A34', 'A148', 'A126', 'A135', 'A7', 'A128', 'A60', 'A123'}
have_cols=set()