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kb_gtdbtk

GTDB-Tk App

kb_mash

KBase MASH app

kb_megahit

KBase module for running the MEGAHIT assembler

kb_quast

KBase wrapper for the QUAST assembly quality assessment tool.

kb_read_library_to_file

Module for converting KBaseFile and KBaseAssembly read library workspace objects to FASTQ files

kb_sdk

Build and test new Apps for the KBase platorm

kb_sdk_docs

KBase SDK Documentation

kb_sourmash

kbase_jira_report_tool

A tool for extracting sprint information from Jira.

kbase_truss_data_upload_jira_report

Sprint data extraction from JIRA

kbasedeveloperbootstrap

This repo contains a tutorial intended to help a developer who is new to KBase learn the architecture, conventions and basic APIs and services well enough to become a productive developer on the platform.

kbasegenehomologyexperiments

Literature search and experiments/benchmarks while researching prior to implementation of a KBase gene homology system.

kbaseminhashexperimentsandscripts

Miscellaneous scripts and procedures produced while developing a MinHash based genome homology application for KBase.

kbasereport

experiments with a report data type for the kbase sdk

kbasesearchengine

mcp

metrics

Scripts and other tools for collecting metrics and generating reports and summaries.

minioawsandgoclient

narrative

narrative_method_specs

narrative_method_specs_ci

Narrative method specs repo for use in the -ci (or other nonproduction) environments

narrative_method_store

njs_wrapper

Service for wrapping Narrative Job Service with additional functionality

rast_sdk

readsutils

Functions for uploading and downloading KBase reads files.

relation_engine_import_benchmarking

Benchmark how importing data into the relation engine, or more specifically ArangoDB

relation_engine_importers

Relation engine importers

relation_engine_incubator

An area for developing scripts / loaders etc before moving them into the RE repositories proper

relation_engine_spec

Specifications for the relation engine (views and schemas)

roadmap

Official roadmap for the KBase project