Git Product home page Git Product logo

bmp-synthesis-manuscript's Introduction

A meta-analysis of the impacts of best management practices on nonpoint source pollutant concentration

This repository contains the data and analysis used in the draft manuscript โ€œA meta-analysis of the impacts of best management practices on nonpoint source pollutant concentration,โ€ by Schramm et al.

This project uses {targets} as the main organizing workflow. The _targets.R file defines the steps of the project workflow amd functions for those setps are stored in the R/ directory. renv is used to manage package versions. To reproduce locally, clone or download this project to your computer. Open the project with RStudio or other IDE.

In the console:

renv::restore()

then use targets::tar_make() to execute the project pipeline. Each step in the pipeline can be accessed with the targets::tar_read() function. For example, targets::tar_read(tn_model) will access the model object we fit to the total nitrogen data.

Funding Statement

This project was funded by a nonpoint source grant from the Texas State Soil and Water Conservation Board.

Working Environment Info

renv::diagnostics()
## Diagnostics Report [renv 1.0.3]
## ===============================
## 
## # Session Info ---------------------------------------------------------------
## R version 4.3.1 (2023-06-16 ucrt)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 11 x64 (build 22631)
## 
## Matrix products: default
## 
## 
## locale:
## [1] LC_COLLATE=English_United States.utf8 
## [2] LC_CTYPE=English_United States.utf8   
## [3] LC_MONETARY=English_United States.utf8
## [4] LC_NUMERIC=C                          
## [5] LC_TIME=English_United States.utf8    
## 
## time zone: America/New_York
## tzcode source: internal
## 
## attached base packages:
## [1] stats     graphics  grDevices datasets  utils     methods   base     
## 
## loaded via a namespace (and not attached):
##  [1] compiler_4.3.1      BiocManager_1.30.22 fastmap_1.1.1      
##  [4] cli_3.6.1           htmltools_0.5.7     tools_4.3.1        
##  [7] rstudioapi_0.15.0   yaml_2.3.7          rmarkdown_2.25     
## [10] knitr_1.45          xfun_0.41           digest_0.6.33      
## [13] rlang_1.1.2         renv_1.0.3          evaluate_0.23      
## 
## # Project --------------------------------------------------------------------
## Project path: "C:/Data-Analysis-Projects/bmp-synthesis-manuscript"
## 
## # Status ---------------------------------------------------------------------
## The following package(s) are in an inconsistent state:
## 
##  package     installed recorded used
##  sessioninfo y         y        n   
## 
## See ?renv::status() for advice on resolving these issues.
## 
## # Packages -------------------------------------------------------------------
##                      Library                         Source   Lockfile                         Source Path Dependency
## BH                  1.81.0-1                           CRAN   1.81.0-1                           CRAN  [1]   indirect
## BiocManager          1.30.22                           CRAN    1.30.22                           CRAN  [1]   indirect
## BiocVersion           3.18.1                   Bioconductor     3.18.1                   Bioconductor  [1]   indirect
## DBI                    1.1.3                           CRAN      1.1.3                           CRAN  [1]   indirect
## DEoptimR               1.1-3                           CRAN       <NA>                           <NA>  [1]       <NA>
## DT                      0.30                           RSPM       <NA>                           <NA>  [1]       <NA>
## DiagrammeR            1.0.10                           CRAN       <NA>                           <NA>  [1]       <NA>
## DiagrammeRsvg            0.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## Formula                1.2-5                           CRAN       <NA>                           <NA>  [1]       <NA>
## Hmisc                  5.1-1                           RSPM       <NA>                           <NA>  [1]       <NA>
## KernSmooth           2.23-22                           CRAN    2.23-22                           CRAN  [2]   indirect
## MASS                  7.3-60                           CRAN     7.3-60                           CRAN  [2]   indirect
## Matrix               1.6-1.1                           CRAN    1.6-1.1                           CRAN  [2]   indirect
## MatrixModels           0.5-3                           CRAN       <NA>                           <NA>  [1]       <NA>
## MuMIn                 1.47.5                           CRAN     1.47.5                           CRAN  [1]     direct
## PRISMA2020             1.1.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## R.methodsS3            1.8.2                           CRAN       <NA>                           <NA>  [1]       <NA>
## R.oo                  1.25.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## R.utils               2.12.3                           CRAN       <NA>                           <NA>  [1]       <NA>
## R6                     2.5.1                           CRAN      2.5.1                           CRAN  [1]   indirect
## RColorBrewer           1.1-3                           CRAN      1.1-3                           CRAN  [1]     direct
## Rcpp                  1.0.11                           CRAN     1.0.11                           CRAN  [1]   indirect
## RcppArmadillo     0.12.6.6.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## RcppEigen          0.3.3.9.4                           CRAN  0.3.3.9.4                           CRAN  [1]   indirect
## SparseM                 1.81                           CRAN       <NA>                           <NA>  [1]       <NA>
## TTR                   0.24.4                           CRAN       <NA>                           <NA>  [1]       <NA>
## V8                     4.4.1                           CRAN      4.4.1                           CRAN  [1]   indirect
## abind                  1.4-5                           CRAN       <NA>                           <NA>  [1]       <NA>
## anytime                0.3.9                           CRAN      0.3.9                           CRAN  [1]   indirect
## askpass                1.2.0                           RSPM      1.2.0                           RSPM  [1]   indirect
## assertthat             0.2.1                           CRAN      0.2.1                           CRAN  [1]   indirect
## backports              1.4.1                           CRAN      1.4.1                           CRAN  [1]   indirect
## base                    <NA>                           <NA>       <NA>                           <NA>  [2]     direct
## base64enc              0.1-3                           CRAN      0.1-3                           CRAN  [1]   indirect
## base64url                1.4                           CRAN        1.4                           CRAN  [1]   indirect
## bayestestR            0.13.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## beeswarm               0.4.0                           CRAN      0.4.0                           CRAN  [1]   indirect
## bigD                   0.2.0                           CRAN      0.2.0                           CRAN  [1]   indirect
## bit                    4.0.5                           CRAN      4.0.5                           CRAN  [1]   indirect
## bit64                  4.0.5                           CRAN      4.0.5                           CRAN  [1]   indirect
## bitops                 1.0-7                           CRAN      1.0-7                           CRAN  [1]   indirect
## blob                   1.2.4                           CRAN      1.2.4                           CRAN  [1]   indirect
## bookdown                0.37                           CRAN       0.37                           CRAN  [1]     direct
## boot                1.3-28.1                           CRAN       <NA>                           <NA>  [2]       <NA>
## brio                   1.1.4                           CRAN       <NA>                           <NA>  [1]       <NA>
## broom                  1.0.5                           CRAN      1.0.5                           CRAN  [1]     direct
## broom.helpers         1.14.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## bs4Dash                2.3.3                           RSPM      2.3.3                           RSPM  [1]     direct
## bslib                  0.6.1                           RSPM      0.6.1                           RSPM  [1]   indirect
## cachem                 1.0.8                           CRAN      1.0.8                           CRAN  [1]   indirect
## callr                  3.7.3                           CRAN      3.7.3                           CRAN  [1]   indirect
## car                    3.1-2                           CRAN       <NA>                           <NA>  [1]       <NA>
## carData                3.0-5                           CRAN       <NA>                           <NA>  [1]       <NA>
## cellranger             1.1.0                           CRAN      1.1.0                           CRAN  [1]   indirect
## checkmate              2.3.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## class                 7.3-22                           CRAN     7.3-22                           CRAN  [2]   indirect
## classInt              0.4-10                           RSPM     0.4-10                           RSPM  [1]   indirect
## cli                    3.6.1                           CRAN      3.6.1                           CRAN  [1]   indirect
## clipr                  0.8.0                           CRAN      0.8.0                           CRAN  [1]   indirect
## clubSandwich          0.5.10                           CRAN       <NA>                           <NA>  [1]       <NA>
## cluster                2.1.4                           CRAN       <NA>                           <NA>  [2]       <NA>
## clustermq              0.9.4                           CRAN      0.9.4                           CRAN  [1]     direct
## codetools             0.2-19                           CRAN     0.2-19                           CRAN  [2]   indirect
## colorspace             2.1-0                           CRAN      2.1-0                           CRAN  [1]   indirect
## commonmark             1.9.0                           CRAN      1.9.0                           CRAN  [1]   indirect
## compiler                <NA>                           <NA>       <NA>                           <NA>  [2]   indirect
## conflicted             1.2.0                           CRAN      1.2.0                           CRAN  [1]   indirect
## correlation            0.8.4                           CRAN       <NA>                           <NA>  [1]       <NA>
## corrplot                0.92                           CRAN       <NA>                           <NA>  [1]       <NA>
## cowplot                1.1.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## cpp11                  0.4.6                           CRAN      0.4.6                           CRAN  [1]   indirect
## crayon                 1.5.2                           CRAN      1.5.2                           CRAN  [1]   indirect
## crosstalk              1.2.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## crul                   1.4.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## curl                   5.1.0                           RSPM      5.1.0                           RSPM  [1]   indirect
## data.table            1.14.8                           CRAN     1.14.8                           CRAN  [1]   indirect
## datawizard             0.9.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## dbplyr                 2.4.0                           RSPM      2.4.0                           RSPM  [1]   indirect
## desc                   1.4.3                           CRAN       <NA>                           <NA>  [1]       <NA>
## diffobj                0.3.5                           CRAN       <NA>                           <NA>  [1]       <NA>
## digest                0.6.33                           CRAN     0.6.33                           CRAN  [1]   indirect
## diptest               0.77-0                           CRAN       <NA>                           <NA>  [1]       <NA>
## downloader               0.4                           CRAN       <NA>                           <NA>  [1]       <NA>
## dplyr                  1.1.4                           RSPM      1.1.4                           RSPM  [1]     direct
## dtplyr                 1.3.1                           CRAN      1.3.1                           CRAN  [1]   indirect
## e1071                 1.7-14                           CRAN     1.7-14                           CRAN  [1]   indirect
## easystats              0.7.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## effectsize             0.8.6                           CRAN       <NA>                           <NA>  [1]       <NA>
## ellipsis               0.3.2                           CRAN      0.3.2                           CRAN  [1]   indirect
## emmeans                1.8.9                           CRAN      1.8.9                           CRAN  [1]   indirect
## estimability           1.4.1                           CRAN      1.4.1                           CRAN  [1]   indirect
## evaluate                0.23                           RSPM       0.23                           RSPM  [1]   indirect
## fansi                  1.0.5                           RSPM      1.0.5                           RSPM  [1]   indirect
## farver                 2.1.1                           CRAN      2.1.1                           CRAN  [1]   indirect
## fastmap                1.1.1                           CRAN      1.1.1                           CRAN  [1]   indirect
## flexmix               2.3-19                           CRAN       <NA>                           <NA>  [1]       <NA>
## flextable              0.9.4                           CRAN       <NA>                           <NA>  [1]       <NA>
## fontBitstreamVera      0.1.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## fontLiberation         0.1.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## fontawesome            0.5.2                           CRAN      0.5.2                           CRAN  [1]   indirect
## fontquiver             0.2.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## forcats                1.0.0                           CRAN      1.0.0                           CRAN  [1]     direct
## foreach                1.5.2                           CRAN       <NA>                           <NA>  [1]       <NA>
## forecast              8.21.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## foreign               0.8-85                           CRAN       <NA>                           <NA>  [2]       <NA>
## fpc                   2.2-11                           CRAN       <NA>                           <NA>  [1]       <NA>
## fracdiff               1.5-2                           CRAN       <NA>                           <NA>  [1]       <NA>
## fresh                  0.2.0                           CRAN      0.2.0                           CRAN  [1]   indirect
## fs                     1.6.3                           CRAN      1.6.3                           CRAN  [1]     direct
## future                1.33.2                           CRAN     1.33.2                           CRAN  [1]     direct
## gargle                 1.5.2                           CRAN      1.5.2                           CRAN  [1]   indirect
## gdtools                0.3.4                           CRAN       <NA>                           <NA>  [1]       <NA>
## generics               0.1.3                           CRAN      0.1.3                           CRAN  [1]   indirect
## gfonts                 0.2.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## ggbeeswarm             0.7.2                           CRAN      0.7.2                           CRAN  [1]   indirect
## ggforce                0.4.1                           CRAN      0.4.1                           CRAN  [1]     direct
## ggplot2                3.4.4                           RSPM      3.4.4                           RSPM  [1]     direct
## ggpubr                 0.6.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## ggrepel                0.9.5                           CRAN      0.9.5                           CRAN  [1]     direct
## ggridges               0.5.6                           CRAN      0.5.6                           CRAN  [1]     direct
## ggsci                  3.0.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## ggsignif               0.6.4                           CRAN       <NA>                           <NA>  [1]       <NA>
## ggtext                 0.1.2                           CRAN      0.1.2                           CRAN  [1]     direct
## glmnet                 4.1-8                           CRAN       <NA>                           <NA>  [1]       <NA>
## globals               0.16.3                           CRAN     0.16.3                           CRAN  [1]   indirect
## glue                   1.6.2                           CRAN      1.6.2                           CRAN  [1]   indirect
## googledrive            2.1.1                           CRAN      2.1.1                           CRAN  [1]   indirect
## googlesheets4          1.1.1                           CRAN      1.1.1                           CRAN  [1]   indirect
## grDevices               <NA>                           <NA>       <NA>                           <NA>  [2]   indirect
## graphics                <NA>                           <NA>       <NA>                           <NA>  [2]   indirect
## grid                    <NA>                           <NA>       <NA>                           <NA>  [2]     direct
## gridExtra                2.3                           CRAN       <NA>                           <NA>  [1]       <NA>
## gridtext               0.1.5                         GitHub      0.1.5                         GitHub  [1]     direct
## gt                    0.10.0                           CRAN     0.10.0                           CRAN  [1]     direct
## gtable                 0.3.4                           CRAN      0.3.4                           CRAN  [1]   indirect
## gtsummary              1.7.2                           CRAN       <NA>                           <NA>  [1]       <NA>
## haven                  2.5.4                           RSPM      2.5.4                           RSPM  [1]   indirect
## highr                   0.10                           CRAN       0.10                           CRAN  [1]   indirect
## hms                    1.1.3                           CRAN      1.1.3                           CRAN  [1]   indirect
## htmlTable              2.4.2                           CRAN       <NA>                           <NA>  [1]       <NA>
## htmltools              0.5.7                           RSPM      0.5.7                           RSPM  [1]   indirect
## htmlwidgets            1.6.3                           CRAN      1.6.3                           CRAN  [1]   indirect
## httpcode               0.3.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## httpuv                1.6.12                           CRAN     1.6.12                           CRAN  [1]   indirect
## httr                   1.4.7                           CRAN      1.4.7                           CRAN  [1]     direct
## ids                    1.0.1                           CRAN      1.0.1                           CRAN  [1]   indirect
## igraph                 1.5.1                           RSPM      1.5.1                           RSPM  [1]   indirect
## insight               0.19.7                           CRAN     0.19.7                           CRAN  [1]   indirect
## isoband                0.2.7                           CRAN      0.2.7                           CRAN  [1]   indirect
## iterators             1.0.14                           CRAN       <NA>                           <NA>  [1]       <NA>
## jomo                   2.7-6                           CRAN       <NA>                           <NA>  [1]       <NA>
## jpeg                  0.1-10                           CRAN     0.1-10                           CRAN  [1]   indirect
## jquerylib              0.1.4                           CRAN      0.1.4                           CRAN  [1]   indirect
## jsonlite               1.8.7                           CRAN      1.8.7                           CRAN  [1]   indirect
## juicyjuice             0.1.0                           CRAN      0.1.0                           CRAN  [1]   indirect
## kableExtra             1.3.4                           CRAN      1.3.4                           CRAN  [1]     direct
## kernlab               0.9-32                           CRAN       <NA>                           <NA>  [1]       <NA>
## knitr                   1.45                           RSPM       1.45                           RSPM  [1]     direct
## labeling               0.4.3                           CRAN      0.4.3                           CRAN  [1]   indirect
## labelled              2.12.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## later                  1.3.1                           CRAN      1.3.1                           CRAN  [1]   indirect
## latex2exp              0.9.6                           CRAN      0.9.6                           CRAN  [1]     direct
## latexdiffr        0.2.0.9000                         GitHub 0.2.0.9000                         GitHub  [1]     direct
## lattice               0.21-8                           CRAN     0.21-8                           CRAN  [2]   indirect
## lazyeval               0.2.2                           CRAN       <NA>                           <NA>  [1]       <NA>
## lifecycle              1.0.4                           RSPM      1.0.4                           RSPM  [1]   indirect
## listenv                0.9.1                           CRAN      0.9.1                           CRAN  [1]   indirect
## lme4                1.1-35.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## lmtest                0.9-40                           CRAN       <NA>                           <NA>  [1]       <NA>
## lubridate              1.9.3                           RSPM      1.9.3                           RSPM  [1]   indirect
## magrittr               2.0.3                           CRAN      2.0.3                           CRAN  [1]   indirect
## markdown                1.11                           RSPM       1.11                           RSPM  [1]     direct
## mathjaxr               1.6-0                           CRAN      1.6-0                           CRAN  [1]   indirect
## mclust                 6.0.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## memoise                2.0.1                           CRAN      2.0.1                           CRAN  [1]   indirect
## metadat                1.2-0                           CRAN      1.2-0                           CRAN  [1]   indirect
## metafor                4.4-0                           CRAN      4.4-0                           CRAN  [1]     direct
## metagear                 0.7                           CRAN        0.7                           CRAN  [1]     direct
## metaviz                0.3.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## methods                 <NA>                           <NA>       <NA>                           <NA>  [2]   indirect
## mgcv                   1.9-0                           CRAN      1.9-0                           CRAN  [1]   indirect
## mice                  3.16.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## mime                    0.12                           CRAN       0.12                           CRAN  [1]   indirect
## minqa                  1.2.6                           CRAN       <NA>                           <NA>  [1]       <NA>
## mitml                  0.4-5                           CRAN       <NA>                           <NA>  [1]       <NA>
## modelbased             0.8.6                           CRAN       <NA>                           <NA>  [1]       <NA>
## modelr                0.1.11                           CRAN     0.1.11                           CRAN  [1]     direct
## modelsummary           1.4.3                           CRAN       <NA>                           <NA>  [1]       <NA>
## modeltools            0.2-23                           CRAN       <NA>                           <NA>  [1]       <NA>
## moments               0.14.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## mpsTemplates           0.2.0 https://mps9506.r-universe.dev      0.2.0 https://mps9506.r-universe.dev  [1]     direct
## munsell                0.5.0                           CRAN      0.5.0                           CRAN  [1]   indirect
## mvtnorm                1.2-4                           CRAN      1.2-4                           CRAN  [1]   indirect
## narray                 0.5.1                           CRAN      0.5.1                           CRAN  [1]   indirect
## nlme                 3.1-163                           CRAN    3.1-163                           CRAN  [2]   indirect
## nloptr                 2.0.3                           CRAN       <NA>                           <NA>  [1]       <NA>
## nnet                  7.3-19                           CRAN       <NA>                           <NA>  [2]       <NA>
## nullabor               0.3.9                           CRAN       <NA>                           <NA>  [1]       <NA>
## numDeriv          2016.8-1.1                           CRAN 2016.8-1.1                           CRAN  [1]   indirect
## officedown             0.3.1                           RSPM       <NA>                           <NA>  [1]       <NA>
## officer                0.6.3                           CRAN      0.6.3                           CRAN  [1]     direct
## openssl                2.1.1                           RSPM      2.1.1                           RSPM  [1]   indirect
## orchaRd                  2.0                         GitHub        2.0                         GitHub  [1]     direct
## ordinal            2023.12-4                           CRAN       <NA>                           <NA>  [1]       <NA>
## pan                      1.9                           CRAN       <NA>                           <NA>  [1]       <NA>
## parallel                <NA>                           <NA>       <NA>                           <NA>  [2]   indirect
## parallelly            1.37.1                           CRAN     1.37.1                           CRAN  [1]   indirect
## parameters            0.21.3                           CRAN       <NA>                           <NA>  [1]       <NA>
## patchwork              1.1.3                           CRAN      1.1.3                           CRAN  [1]     direct
## pbapply                1.7-2                           CRAN      1.7-2                           CRAN  [1]   indirect
## pbkrtest               0.5.2                           CRAN       <NA>                           <NA>  [1]       <NA>
## performance           0.10.8                           CRAN       <NA>                           <NA>  [1]       <NA>
## pillar                 1.9.0                           CRAN      1.9.0                           CRAN  [1]   indirect
## pingr                  2.0.3                           RSPM      2.0.3                           RSPM  [1]     direct
## pkgbuild               1.4.3                           CRAN       <NA>                           <NA>  [1]       <NA>
## pkgconfig              2.0.3                           CRAN      2.0.3                           CRAN  [1]   indirect
## pkgload                1.3.3                           CRAN       <NA>                           <NA>  [1]       <NA>
## png                    0.1-8                           CRAN      0.1-8                           CRAN  [1]   indirect
## polyclip              1.10-6                           CRAN     1.10-6                           CRAN  [1]   indirect
## polynom                1.4-1                           CRAN       <NA>                           <NA>  [1]       <NA>
## prabclus               2.3-3                           CRAN       <NA>                           <NA>  [1]       <NA>
## praise                 1.0.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## prettyunits            1.2.0                           RSPM      1.2.0                           RSPM  [1]   indirect
## processx               3.8.2                           CRAN      3.8.2                           CRAN  [1]   indirect
## progress               1.2.2                           CRAN      1.2.2                           CRAN  [1]   indirect
## promises               1.2.1                           CRAN      1.2.1                           CRAN  [1]   indirect
## proxy                 0.4-27                           CRAN     0.4-27                           CRAN  [1]   indirect
## ps                     1.7.5                           CRAN      1.7.5                           CRAN  [1]   indirect
## purrr                  1.0.2                           CRAN      1.0.2                           CRAN  [1]     direct
## quadprog               1.5-8                           CRAN       <NA>                           <NA>  [1]       <NA>
## quantmod              0.4.25                           CRAN       <NA>                           <NA>  [1]       <NA>
## quantreg                5.97                           CRAN       <NA>                           <NA>  [1]       <NA>
## ragg                   1.2.6                           RSPM      1.2.6                           RSPM  [1]     direct
## ranger                0.16.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## rappdirs               0.3.3                           CRAN      0.3.3                           CRAN  [1]   indirect
## reactR                 0.5.0                           CRAN      0.5.0                           CRAN  [1]   indirect
## reactable              0.4.4                           CRAN      0.4.4                           CRAN  [1]   indirect
## readr                  2.1.4                           CRAN      2.1.4                           CRAN  [1]   indirect
## readxl                 1.4.3                           CRAN      1.4.3                           CRAN  [1]     direct
## rematch                2.0.0                           CRAN      2.0.0                           CRAN  [1]   indirect
## rematch2               2.1.2                           CRAN      2.1.2                           CRAN  [1]   indirect
## renv                   1.0.3                           CRAN      1.0.3                           CRAN  [1]     direct
## report                 0.5.8                           CRAN       <NA>                           <NA>  [1]       <NA>
## reprex                 2.0.2                           CRAN      2.0.2                           CRAN  [1]   indirect
## rio                    1.0.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## rlang                  1.1.2                           RSPM      1.1.2                           RSPM  [1]   indirect
## rmarkdown               2.25                           RSPM       2.25                           RSPM  [1]     direct
## rmdfiltr               0.1.3                         GitHub       <NA>                           <NA>  [1]       <NA>
## robustbase            0.99-1                           CRAN       <NA>                           <NA>  [1]       <NA>
## rpart                 4.1.19                           CRAN       <NA>                           <NA>  [2]       <NA>
## rprojroot              2.0.4                           CRAN      2.0.4                           CRAN  [1]   indirect
## rstatix                0.7.2                           CRAN       <NA>                           <NA>  [1]       <NA>
## rstudioapi            0.15.0                           CRAN     0.15.0                           CRAN  [1]     direct
## rsvg                   2.6.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## rticles               0.26.1                         GitHub     0.26.1                         GitHub  [1]     direct
## rvest                  1.0.3                           CRAN      1.0.3                           CRAN  [1]   indirect
## rvg                    0.3.3                           CRAN       <NA>                           <NA>  [1]       <NA>
## s2                     1.1.6                           CRAN      1.1.6                           CRAN  [1]   indirect
## sandwich               3.1-0                           CRAN       <NA>                           <NA>  [1]       <NA>
## sass                   0.4.7                           CRAN      0.4.7                           CRAN  [1]   indirect
## scales                 1.3.0                           RSPM      1.3.0                           RSPM  [1]     direct
## see                    0.8.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## selectr                0.4-2                           CRAN      0.4-2                           CRAN  [1]   indirect
## sessioninfo            1.2.2                           CRAN      1.2.2                           CRAN  [1]       <NA>
## sf                    1.0-15                           CRAN     1.0-15                           CRAN  [1]     direct
## shape                  1.4.6                           CRAN       <NA>                           <NA>  [1]       <NA>
## shiny                  1.8.0                           CRAN      1.8.0                           CRAN  [1]     direct
## shinyWidgets           0.8.6                           RSPM      0.8.6                           RSPM  [1]     direct
## shinybusy              0.3.3                           RSPM      0.3.3                           RSPM  [1]     direct
## shinyjs                2.1.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## sourcetools          0.1.7-1                           CRAN    0.1.7-1                           CRAN  [1]   indirect
## spatial               7.3-17                           CRAN       <NA>                           <NA>  [2]       <NA>
## splines                 <NA>                           <NA>       <NA>                           <NA>  [2]   indirect
## stats                   <NA>                           <NA>       <NA>                           <NA>  [2]   indirect
## stats4                  <NA>                           <NA>       <NA>                           <NA>  [2]   indirect
## stringi                1.8.2                           RSPM      1.8.2                           RSPM  [1]   indirect
## stringr                1.5.1                           RSPM      1.5.1                           RSPM  [1]     direct
## survival               3.5-7                           CRAN       <NA>                           <NA>  [2]       <NA>
## svglite                2.1.3                           CRAN      2.1.3                           CRAN  [1]   indirect
## sys                    3.4.2                           CRAN      3.4.2                           CRAN  [1]   indirect
## systemfonts            1.0.5                           RSPM      1.0.5                           RSPM  [1]     direct
## tables                0.9.17                           CRAN       <NA>                           <NA>  [1]       <NA>
## targets                1.3.2                           RSPM      1.3.2                           RSPM  [1]     direct
## terra                 1.7-65                           CRAN     1.7-65                           CRAN  [1]     direct
## testthat               3.2.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## texreg                1.39.3                           CRAN       <NA>                           <NA>  [1]       <NA>
## textshaping            0.3.7                           RSPM      0.3.7                           RSPM  [1]   indirect
## tibble                 3.2.1                           CRAN      3.2.1                           CRAN  [1]     direct
## tidyr                  1.3.0                           CRAN      1.3.0                           CRAN  [1]     direct
## tidyselect             1.2.0                           CRAN      1.2.0                           CRAN  [1]   indirect
## tidyterra              0.5.2                           CRAN       <NA>                           <NA>  [1]       <NA>
## tidyverse              2.0.0                           CRAN      2.0.0                           CRAN  [1]     direct
## tigris                 2.0.4                           CRAN      2.0.4                           CRAN  [1]     direct
## timeDate            4032.109                           CRAN       <NA>                           <NA>  [1]       <NA>
## timechange             0.2.0                           CRAN      0.2.0                           CRAN  [1]   indirect
## tinytex                 0.49                           RSPM       0.49                           RSPM  [1]     direct
## tools                   <NA>                           <NA>       <NA>                           <NA>  [2]   indirect
## triebeard              0.4.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## tseries              0.10-55                           CRAN       <NA>                           <NA>  [1]       <NA>
## tsibble                1.1.3                           CRAN       <NA>                           <NA>  [1]       <NA>
## tweenr                 2.0.2                           CRAN      2.0.2                           CRAN  [1]   indirect
## twriTemplates          0.3.0   https://txwri.r-universe.dev       <NA>                           <NA>  [1]       <NA>
## tzdb                   0.4.0                           CRAN      0.4.0                           CRAN  [1]   indirect
## ucminf                 1.2.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## units                  0.8-5                           CRAN      0.8-5                           CRAN  [1]     direct
## urca                   1.3-3                           CRAN       <NA>                           <NA>  [1]       <NA>
## urltools               1.7.3                           CRAN       <NA>                           <NA>  [1]       <NA>
## utf8                   1.2.4                           RSPM      1.2.4                           RSPM  [1]   indirect
## utils                   <NA>                           <NA>       <NA>                           <NA>  [2]   indirect
## uuid                   1.1-1                           CRAN      1.1-1                           CRAN  [1]   indirect
## vctrs                  0.6.4                           RSPM      0.6.4                           RSPM  [1]   indirect
## vipor                  0.4.7                           CRAN      0.4.7                           CRAN  [1]   indirect
## viridis                0.6.4                           CRAN       <NA>                           <NA>  [1]       <NA>
## viridisLite            0.4.2                           CRAN      0.4.2                           CRAN  [1]   indirect
## visNetwork             2.1.2                           CRAN      2.1.2                           CRAN  [1]     direct
## vroom                  1.6.4                           RSPM      1.6.4                           RSPM  [1]   indirect
## waiter                 0.2.5                           CRAN      0.2.5                           CRAN  [1]   indirect
## waldo                  0.5.2                           CRAN       <NA>                           <NA>  [1]       <NA>
## webp                   1.2.0                           CRAN       <NA>                           <NA>  [1]       <NA>
## webshot                0.5.5                           CRAN      0.5.5                           CRAN  [1]   indirect
## withr                  2.5.2                           RSPM      2.5.2                           RSPM  [1]   indirect
## wk                     0.9.1                           CRAN      0.9.1                           CRAN  [1]   indirect
## writexl                1.4.2                           RSPM       <NA>                           <NA>  [1]       <NA>
## xfun                    0.41                           RSPM       0.41                           RSPM  [1]     direct
## xml2                   1.3.5                           CRAN      1.3.5                           CRAN  [1]   indirect
## xtable                 1.8-4                           CRAN      1.8-4                           CRAN  [1]   indirect
## xts                   0.13.1                           CRAN       <NA>                           <NA>  [1]       <NA>
## yaml                   2.3.7                           CRAN      2.3.7                           CRAN  [1]   indirect
## zip                    2.3.0                           CRAN      2.3.0                           CRAN  [1]   indirect
## zoo                   1.8-12                           CRAN       <NA>                           <NA>  [1]       <NA>
## 
## [1]: C:/Data-Analysis-Projects/bmp-synthesis-manuscript/renv/library/R-4.3/x86_64-w64-mingw32       
## [2]: C:/Users/michael.schramm/AppData/Local/R/cache/R/renv/sandbox/R-4.3/x86_64-w64-mingw32/f8897b8d
## 
## # ABI ------------------------------------------------------------------------
## - ABI conflict checks are not yet implemented on Windows.
## 
## # User Profile ---------------------------------------------------------------
## [no user profile detected]
## 
## # Settings -------------------------------------------------------------------
## List of 13
##  $ bioconductor.version     : NULL
##  $ external.libraries       : chr(0) 
##  $ ignored.packages         : chr(0) 
##  $ package.dependency.fields: chr [1:3] "Imports" "Depends" "LinkingTo"
##  $ ppm.enabled              : NULL
##  $ ppm.ignored.urls         : chr(0) 
##  $ r.version                : NULL
##  $ snapshot.type            : chr "implicit"
##  $ use.cache                : logi TRUE
##  $ vcs.ignore.cellar        : logi TRUE
##  $ vcs.ignore.library       : logi TRUE
##  $ vcs.ignore.local         : logi TRUE
##  $ vcs.manage.ignores       : logi TRUE
## 
## # Options --------------------------------------------------------------------
## List of 8
##  $ defaultPackages                     : chr [1:6] "datasets" "utils" "grDevices" "graphics" ...
##  $ download.file.method                : NULL
##  $ download.file.extra                 : NULL
##  $ install.packages.compile.from.source: chr "interactive"
##  $ pkgType                             : chr "both"
##  $ repos                               : Named chr [1:7] "https://bioconductor.org/packages/3.18/bioc" "https://bioconductor.org/packages/3.18/data/annotation" "https://bioconductor.org/packages/3.18/data/experiment" "https://bioconductor.org/packages/3.18/workflows" ...
##   ..- attr(*, "names")= chr [1:7] "BioCsoft" "BioCann" "BioCexp" "BioCworkflows" ...
##  $ renv.consent                        : logi TRUE
##  $ renv.verbose                        : logi TRUE
## 
## # Environment Variables ------------------------------------------------------
## HOME                        = C:\Users\michael.schramm\Documents
## LANG                        = <NA>
## MAKE                        = <NA>
## R_LIBS                      = C:/Data-Analysis-Projects/bmp-synthesis-manuscript/renv/library/R-4.3/x86_64-w64-mingw32;C:/Users/michael.schramm/AppData/Local/R/cache/R/renv/sandbox/R-4.3/x86_64-w64-mingw32/f8897b8d
## R_LIBS_SITE                 = C:/Users/michael.schramm/AppData/Local/Programs/R/R-4.3.1/site-library
## R_LIBS_USER                 = C:/Data-Analysis-Projects/bmp-synthesis-manuscript/renv/library/R-4.3/x86_64-w64-mingw32
## RENV_DEFAULT_R_ENVIRON      = <NA>
## RENV_DEFAULT_R_ENVIRON_USER = <NA>
## RENV_DEFAULT_R_LIBS         = <NA>
## RENV_DEFAULT_R_LIBS_SITE    = C:/Users/michael.schramm/AppData/Local/Programs/R/R-4.3.1/site-library
## RENV_DEFAULT_R_LIBS_USER    = C:\Users\michael.schramm\AppData\Local/R/win-library/4.3
## RENV_DEFAULT_R_PROFILE      = <NA>
## RENV_DEFAULT_R_PROFILE_USER = <NA>
## RENV_PROJECT                = C:/Data-Analysis-Projects/bmp-synthesis-manuscript
## 
## # PATH -----------------------------------------------------------------------
## - C:\rtools43/x86_64-w64-mingw32.static.posix/bin
## - C:\rtools43/usr/bin
## - C:\rtools43\x86_64-w64-mingw32.static.posix\bin
## - C:\rtools43\usr\bin
## - C:\Users\michael.schramm\AppData\Local\Programs\R\R-4.3.1\bin\x64
## - C:\Windows\system32
## - C:\Windows
## - C:\Windows\System32\Wbem
## - C:\Windows\System32\WindowsPowerShell\v1.0\
## - C:\Windows\System32\OpenSSH\
## - C:\Program Files\dotnet\
## - C:\Users\michael.schramm\AppData\Local\Programs\Quarto\bin
## - C:\Users\michael.schramm\AppData\Local\Microsoft\WindowsApps
## - C:\Users\michael.schramm\AppData\Local\Programs\Git\cmd
## - C:\MyPerl\c\bin
## - C:\MyPerl\perl\site\bin
## - C:\MyPerl\perl\bin
## - C:\Program Files\RStudio\resources\app\bin\quarto\bin\tools
## - C:\Users\michael.schramm\AppData\Local\Programs\Microsoft VS Code\bin
## - C:\Users\michael.schramm\AppData\Local\Programs\R\R-4.3.1
## - C:\Users\michael.schramm\AppData\Roaming\TinyTeX\bin\windows
## - C:\Users\michael.schramm\AppData\Local\Programs\Quarto\bin
## - C:\Program Files\RStudio\resources\app\bin\postback
## 
## # Cache ----------------------------------------------------------------------
## There are a total of 1000 packages installed in the renv cache.
## Cache path: "C:/Users/michael.schramm/AppData/Local/R/cache/R/renv/cache/v5/R-4.3/x86_64-w64-mingw32"

bmp-synthesis-manuscript's People

Watchers

Michael Schramm avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.