Comments (1)
Hi,
Sorry for taking so long to answer.
From what I'm seeing, the script allowing to filter out alignments of the SR to the LR that are too short is causing the problem.
There might be various solutions to your issue, so if you still have the temporary files of your run, could you please provide me:
- The code of the bin/filterOutShortAlignments.py script (I don't maintain the anaconda version myself, so it might be outdated)
- The first few lines of the SR/LR alignments file (should be in the tmp directory you've chosen (HG_pid if you didn't chose one), under SR_on_LR.sam)
Pierre
from hg-color.
Related Issues (17)
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