Comments (2)
Hi,
Seems to be caused by the fact your long reads contain '/' characters in their headers.
Could you please try to switch those '/' to '_' or '-' and rerun HG-CoLoR?
I think it should do the trick.
Pierre
from hg-color.
Hi,
I modified my fasta and indeed it is working.
Thank you for your answer,
Margaux-Alison
from hg-color.
Related Issues (17)
- Error messages HOT 12
- runtime estimation HOT 3
- Error (core dumped) HOT 4
- What is the proper output file HOT 2
- Error While Running QuorUM HOT 5
- compile error: fatal error: test/testdata.h: No such file or directory HOT 1
- tmp files deleted before job is finished HOT 2
- Running time? HOT 4
- Run fails and only prints 'Correcting the short reads' HOT 2
- Serious safety problem, --tmpdir parameter is deleted with no checking HOT 2
- Fail due to erroneous string in alignment file? HOT 1
- avoid reverse complement files HOT 1
- blasr doesn't use multiple threads? HOT 1
- Error HOT 1
- Disk quota exceeded when there is enough space on disk HOT 6
- optimal short read data HOT 2
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from hg-color.