microscope-metrics is a Python library to control microscope quality based on standardized samples

You may find documentation the Documentation pages.

We aim to provide some example code in the future examples For the time being please refer to the tests directory to find some example code

microscope-metrics is designed to be used with microscopemetrics-omero to store the results in an OMERO server. The measurements made by micrsocope-metrics are backed up by a model that can be found in the microscopemetrics-schema repository. The model is also accessible through the schema website

If you just want to use microscope-metrics you may just install microscope-metrics with pip

  pip install microscopemetrics

For development, we use poetry After installing poetry, you can install microscope-metrics running the following command in the root directory of the project

  poetry install

# TODO: add some examples

To run tests, use pytest from the root directory of the project

  pytest