Comments (2)
Please update to the latest version of hypeR with:
devtools::install_github("montilab/hypeR")
The data page on the docs should help with downloading the genesets you're interested in! You can access it here.
from hyper.
Thank you, it's working now.
from hyper.
Related Issues (20)
- Plots not diplaying in jupyter notebook HOT 3
- GSEA arguement not recognised hypeR HOT 1
- Error in conexion HOT 1
- quiet
- reactable should be "wider" HOT 1
- Enrichment maps unable to export in a .tiff format HOT 2
- Duplicated gene symbols in the output of msigdb_download HOT 6
- sizes argument in hyp_dots function HOT 1
- error in GSEA about weighted signatures HOT 1
- How to get signetures enriched in a pathway? HOT 1
- hypeR-dot plots with KS test should incorporate directionality information
- KS with mx.diff=TRUE (GSVA-like)
- .check_overlap returns a fraction, not a percentage HOT 1
- Error in hyp_hmap HOT 2
- X-axis and Outputting Gene Overlap Size HOT 2
- rctbl_build does not work with method="ks" HOT 1
- .kstest needs to match ks.test (modulo the sign)
- MSigDB C7 retrieval fails
- rgsets does not support proper object "duplication" by value
- Hits names should be quoted (like in the csv format)
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from hyper.