Comments (2)
I think we have a solution now:
- change mapping predicate to owl:equivalentClass
- Run semsql afterwards as relationgraph will deal with the issue
Interesting: in the issue INCATools/ontology-access-kit#634 explains an hypothesis that actually children of equivalent classes will move closer together in the semantic space, which may introduce a bias. Ask me about this @souzadevinicius if you want to understand better :)
from monarch-semantic-similarity-profiles.
Did this work? Do you see significant differences in the upheno2-lattice and upheno2-equivalence profiles?
from monarch-semantic-similarity-profiles.
Related Issues (20)
- Add `make release` goal to makefile
- All semantic similarity profiles should be gzipped
- Make sure all directories exist
- Add a method for generating ontology embeddings to makefile HOT 1
- Why is HP:phenotypic abormality so different from MP:phenotypic abnormality? HOT 2
- All TSV files produced should come with a SSSOM-style header
- Create Monarch KG enriched variant of Phenio for experimentation HOT 1
- Adding G2P and D2P associations to Phenio
- Phenotypic similarity based on g2d, g2p _across_ SSPOs HOT 9
- Create semantic similarity profile for HP-FBcv
- Create a goal for computing ic scores in Makefile
- EPIC: replace exomiser p2p pipeline with semsimian
- Error during loading IC file in SEMSIM calculation HOT 6
- Calculating HPxXPO Semsim
- Add suffix IC to the generated SEMSIM profiles
- Add information content file as a dependency during SEMSIM profile generation
- Rerun experiments after SEMSIM IC bug fix
- Generate SEMSIM Profiles Markdown Documentation from Jinja template
- New analysis of phenodigm score
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from monarch-semantic-similarity-profiles.