Comments (5)
adcroft
commented on June 4, 2024
It's working for me. Is this XML-driven? Any idea what file is missing. I'm guessing it might be this file but I'm not sure since it's out of our usual domain...
lrwxrwxrwx 1 Alistair.Adcroft gfdl_O 58 2014-03-07 13:12 mg_drag.res.nc -> .datasets/AM2_LM3_MOM6i_1deg/tikal/1990_ICs/mg_drag.res.nc
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nikizadehgfdl
commented on June 4, 2024
When I list that INPUT I get the following. There seems to be a lot of files missing, not just mg_drag.res.nc, e.g., cns_*.nc What do you get?
t1-batch2: /lustre/f1/Niki.Zadeh/testing_20140911_mom6_20140911/FMS_compile_libs/src/mom6/examples/coupled_AM2_LM3_SIS2/AM2_SIS2_MOM6i_1deg/INPUT % ls
aerosol.optical.dat eftsw4str ground_type_field h2ocoeff_ckd_0_3000_10cm_hi00 id1o3 o39001200_hi92_data
annual_mean_ozone esf_sw_input_data_n38b18 groundwater_residence_time_field h2ocoeff_ckd_speccombwidebds_hi00 id2h2obdckd2p1 radfn_5-2995_100-490k
BetaDistributionTable.txt esf_sw_input_data_n72b25 h2o12001400_hi00_data h2ocoeff_ckd_speccombwidebds_hi92 id2h2obdfull randelo3data
ch4_gblannualdata f113_gblannualdata h2o12001400_hi92_data h2ocoeff_rsb_0_3000_10cm_hi00 id2h2orbts river_destination_field
co2_gblannualdata f11_gblannualdata h2ockd2.1_corrdata h2ocoeff_rsb_speccombwidebds_hi00 lean_solar_spectral_data.dat seasonal_ozone
coupler.res f12_gblannualdata h2ockd2.1_data h2ocoeff_rsb_speccombwidebds_hi92 n2o_gblannualdata stdlvls
cover_type_field f22_gblannualdata h2ockd2.4_corrdata id1ch4n2 o39001200_hi00_data swstratendramadata
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adcroft
commented on June 4, 2024
The files are listed under https://github.com/CommerceGov/NOAA-GFDL-MOM6/tree/dev/master/examples/coupled_AM2_LM3_SIS2/AM2_SIS2_MOM6i_1deg/INPUT
It's areal shame that FRE doesn't let you do a wild-card.
FWIW here is my ls examples/coupled_AM2_LM3_SIS2/AM2_SIS2_MOM6i_1deg/INPUT/. I don't know if they are all needed but we have needed them at some point for some model...
aerosol.climatology.nc cns_1320_490630.nc cns_310_12001400.nc cns_4000_12001400.nc f11_gblannualdata ice_model.res.nc radfn_5-2995_100-490k
aerosol.optical.dat cns_1320_490850.nc cns_310_560630.nc cns_500_10701200.nc f12_gblannualdata id1ch4n2 radiation_driver.res.nc
albedo.data.nc cns_1320_630700.nc cns_330_43um.nc cns_500_12001400.nc f22_gblannualdata id1o3 radiative_gases.res.nc
amip1_sst.data.nc cns_1320_700850.nc cns_330_490630.nc cns_500_560630.nc fv_rst.res.nc id2h2obdckd2p1 randelo3data
annual_mean_ozone cns_165_43um.nc cns_330_490850.nc cns_600_43um.nc fv_srf_wnd.res.nc id2h2obdfull reynolds_sst.data.nc
asmsw_data.nc cns_165_490630.nc cns_330_630700.nc cns_600_490630.nc geohydrology.nc id2h2orbts reyoi_sst.data.nc
atmos_coupled.res.nc cns_165_490850.nc cns_330_700850.nc cns_600_490850.nc geohydrology_table.nc lake.res.nc river_data.nc
atmos_hgrid.nc cns_165_630700.nc cns_340_10701200.nc cns_600_630700.nc geothermal_heating_cm2g.nc land_hgrid.nc river_destination_field
atmos_mosaic.nc cns_165_700850.nc cns_340_12001400.nc cns_600_700850.nc glac.res.nc land_mask.nc river.res.nc
atmos_mosaic_tile1Xland_mosaic_tile1.nc cns_1750_12001400.nc cns_340_560630.nc cns_660_43um.nc GOLD_IC.2010.11.15.nc land_mosaic.nc salt_restore.nc
atmos_mosaic_tile1Xocean_mosaic_tile1.nc cns_180_10701200.nc cns_348_43um.nc cns_660_490630.nc GOLD_IC_L63.12.19.2008.nc land_mosaic_tile1Xocean_mosaic_tile1.nc seasonal_ozone
atmos_tracers.res.nc cns_180_12001400.nc cns_348_490630.nc cns_660_490850.nc GOLD.res.nc land.res.nc seawifs_1998-2006_GOLD_smoothed_2X.nc
basin.nc cns_180_560630.nc cns_348_490850.nc cns_660_630700.nc grid_spec.nc lean_solar_spectral_data.dat sgs_h2.nc
BetaDistributionTable.txt cns_2250_12001400.nc cns_348_630700.nc cns_660_700850.nc ground_type_field mg_drag.res.nc snow.res.nc
cana.res.nc cns_275_10701200.nc cns_348_700850.nc cns_700_12001400.nc ground_type.nc mosaic.nc soil_brdf.nc
cfc.bc.nc cns_275_12001400.nc cns_356_43um.nc co2_gblannualdata groundwater_residence_time_field n2o_gblannualdata soil.res.nc
ch4_gblannualdata cns_275_560630.nc cns_356_490630.nc conc_all.nc gustiness_qscat.nc navy_topography.data.nc sst_ice_clim.nc
clim_CHL_esm2g_yrs_201-360.nc cns_2800_12001400.nc cns_356_490850.nc coupler.res h2o12001400_hi00_data o39001200_hi00_data stdlvls
cns_0_10701200.nc cns_280_10701200.nc cns_356_630700.nc cover_type_field h2o12001400_hi92_data o39001200_hi92_data strat_cloud.res.nc
cns_0_12001400.nc cns_280_12001400.nc cns_356_700850.nc cover_type_field.nc h2ockd2.1_corrdata o3.climatology.nc swstratendramadata
cns_0_43um.nc cns_280_560630.nc cns_360_43um.nc cover_type.nc h2ockd2.1_data ocean_grid.7.29.2008_fixed.nc temp_restore.nc
cns_0_490630.nc cns_300_12001400.nc cns_360_490630.nc eftsw4str h2ockd2.4_corrdata ocean_hgrid.nc tideamp.nc
cns_0_490850.nc cns_300_43um.nc cns_360_490850.nc emissions.ch3i.GEOS4x5.nc h2ocoeff_ckd_0_3000_10cm_hi00 ocean_mask.nc topog.nc
cns_0_560630.nc cns_300_490630.nc cns_360_630700.nc esf_sw_input_data_n38b18 h2ocoeff_ckd_speccombwidebds_hi00 ocean_mosaic.nc vegn1.res.nc
cns_0_630700.nc cns_300_490850.nc cns_360_700850.nc esf_sw_input_data_n72b25 h2ocoeff_ckd_speccombwidebds_hi92 ocean_vgrid.nc vegn2.res.nc
cns_0_700850.nc cns_300_630700.nc cns_375_10701200.nc extlw_data.nc h2ocoeff_rsb_0_3000_10cm_hi00 OM3_zgrid.nc WOA05_pottemp_salt.nc
cns_1250_12001400.nc cns_300_700850.nc cns_375_12001400.nc extsw_data.nc h2ocoeff_rsb_speccombwidebds_hi00 omgsw_data.nc zonal_ozone_data.nc
cns_1320_43um.nc cns_310_10701200.nc cns_375_560630.nc f113_gblannualdata h2ocoeff_rsb_speccombwidebds_hi92 physics_driver.res.nc
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nikizadehgfdl
commented on June 4, 2024
This has nothing to do with FRE. Here's the procedure to reproduce:
gaea6: /ncrc/home2/Niki.Zadeh % git clone --recursive [email protected]:CommerceGov/NOAA-GFDL-MOM6.git
Cloning into 'NOAA-GFDL-MOM6'...
remote: Counting objects: 24787, done.
remote: Compressing objects: 100% (6/6), done.
remote: Total 24787 (delta 0), reused 0 (delta 0)
Receiving objects: 100% (24787/24787), 27.45 MiB | 5.18 MiB/s, done.
Resolving deltas: 100% (16977/16977), done.
Checking connectivity... done
Checking out files: 100% (2118/2118), done.
Submodule 'pkg/CVMix-src' (https://github.com/CVMix/CVMix-src.git) registered for path 'pkg/CVMix-src'
Submodule 'tools/matlab/gtools' (https://github.com/Adcroft/gtools.git) registered for path 'tools/matlab/gtools'
Submodule 'tools/python/025gridGeneration/MIDAS' (https://github.com/mjharriso/MIDAS.git) registered for path 'tools/python/025gridGeneration/MIDAS'
Cloning into 'pkg/CVMix-src'...
remote: Counting objects: 2526, done.
remote: Total 2526 (delta 0), reused 0 (delta 0)
Receiving objects: 100% (2526/2526), 4.30 MiB | 0 bytes/s, done.
Resolving deltas: 100% (1816/1816), done.
Checking connectivity... done
Submodule path 'pkg/CVMix-src': checked out '0f781a27094c151f1367e362c8b603795c2e80a3'
Cloning into 'tools/matlab/gtools'...
remote: Counting objects: 42, done.
remote: Compressing objects: 100% (31/31), done.
remote: Total 42 (delta 11), reused 40 (delta 10)
Unpacking objects: 100% (42/42), done.
Checking connectivity... done
Submodule path 'tools/matlab/gtools': checked out 'da62c575154a5a0a16993656a6951a0f35c0fc07'
Cloning into 'tools/python/025gridGeneration/MIDAS'...
remote: Counting objects: 602, done.
remote: Total 602 (delta 0), reused 0 (delta 0)
Receiving objects: 100% (602/602), 1.44 MiB | 0 bytes/s, done.
Resolving deltas: 100% (345/345), done.
Checking connectivity... done
Submodule path 'tools/python/025gridGeneration/MIDAS': checked out '1ca9a60b0df121c839a9f85cfba60dcaf944b19c'
gaea6: /ncrc/home2/Niki.Zadeh % ls NOAA-GFDL-MOM6/examples/coupled_AM2_LM3_SIS2/AM2_SIS2_MOM6i_1deg/INPUT/
aerosol.optical.dat eftsw4str ground_type_field h2ocoeff_ckd_0_3000_10cm_hi00 id1o3 o39001200_hi92_data
annual_mean_ozone esf_sw_input_data_n38b18 groundwater_residence_time_field h2ocoeff_ckd_speccombwidebds_hi00 id2h2obdckd2p1 radfn_5-2995_100-490k
BetaDistributionTable.txt esf_sw_input_data_n72b25 h2o12001400_hi00_data h2ocoeff_ckd_speccombwidebds_hi92 id2h2obdfull randelo3data
ch4_gblannualdata f113_gblannualdata h2o12001400_hi92_data h2ocoeff_rsb_0_3000_10cm_hi00 id2h2orbts river_destination_field
co2_gblannualdata f11_gblannualdata h2ockd2.1_corrdata h2ocoeff_rsb_speccombwidebds_hi00 lean_solar_spectral_data.dat seasonal_ozone
coupler.res f12_gblannualdata h2ockd2.1_data h2ocoeff_rsb_speccombwidebds_hi92 n2o_gblannualdata stdlvls
cover_type_field f22_gblannualdata h2ockd2.4_corrdata id1ch4n2 o39001200_hi00_data swstratendramadata
gaea6: /ncrc/home2/Niki.Zadeh %
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adcroft
commented on June 4, 2024
@nikizadehgfdl you're correct; the INPUT/ directory is incomplete in the repository even though @Hallberg-NOAA and I both have complete directories. I think the cause can be traced back to the .gitignore created in the first commit of the repo which has a *.nc in it. We were still learning at that point.
Ironically, commit e11a83f (from March) was explicitly trying to fix this setup but evidently I failed to test it properly.
I'll fix the .gitignore first (which shouldn't be so inclusive) and then sort out the INPUT directory.
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