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cluster-utils's Introduction

THIS MOLGENIS VERSION IS IN ARCHIVE MODE. PLEASE USE NEXT GENERATION AT MOLGENIS-EMX2

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Welcome to MOLGENIS

MOLGENIS is a collaborative open source project on a mission to generate great software infrastructure for life science research.

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MOLGENIS has a frontend and a backend. You can develop on them separately. When you want to develop an API and and App simultaneously you need to checkout both.

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cluster-utils's Issues

ctop on ubuntu 20.04 with slurm 19.05 displays an error

Capture d’écran 2021-04-18 à 19 26 25
On ubuntu 20.04 and slurm 19.05 I get this error message when I execute ctop: ERROR: Parsing /usr/bin/squeue data failed for job 2901 (2901 cpu=30,node=1,billing=30).Argument "?" isn't numeric in numeric le (<=) at ./ctop line 1007.

all cpu values have the value "?"

I have installed libcurses-perl, but I don't know if there are any other dependencies needed?

is it possible to add UNLIMITED as a possible value in TimeLimit or other

thank you for your answers

WISH: ctop - disable dashlines to save vertical space

Issue

When using ctop, each node consumes at least two lines in the grid view, because of the dashlines (---------------) separating each node. If you've got lots of nodes, you end up running out of vertical space.

Wish

Add an option to not print those dashlines, e.g.

$ ctop -H

That could effectively reduce the number of lines used by the grid view to as much as 50%.

The option could disable the two calls to _PrintDashLine();

_PrintDashLine($max_length, $headerspaces, $columns);

_PrintDashLine($max_length, 1, $columns);

ctop errors

  • Odd number of elements in hash assignment at
    /apps/software/cluster-utils/v18.08.1-GCCcore-7.3.0/bin/ctop line 785.
  • FATAL: Unsupported unit GM in memory value: 4GM. at
    /apps/software/cluster-utils/v18.08.1-GCCcore-7.3.0/bin/ctop line 872.

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