Light

mojaveazure Goto Github PK

followers: 215.0 following: 16.0 repos: 23.0 gists: 32.0

Name: Paul Hoffman

Type: User

Company: @TileDB-Inc

Bio: Software engineer @TileDB-Inc; formerly @satijalab, @LappalainenLab, and @MorrellLAB

Location: New York, New York

Hello World

I am Paul Hoffman, a senior bioinformatician with the Satija and Lappalainen Labs at the New York Genome Center. My work revolves around building software and for bioinformatic analyses, including an R package for analyzing single-cell data, along with several extension packages, and a pipeline for processing RNA-seq data. I work primarily in R and Python, but am always learning.

Social

Technologies Used

Basic Stats

Recent Activity

Paul Hoffman's Projects

angsd-wrapper

Utilities for analyzing next generation sequencing data

anndata_updater

argmatch

barcseek

BarcSeek: A Flexible Barcode Partitioning Tool for Demultiplexing Genomic Sequencing Data

blast_to_bed

Convert BLAST XML alignments to BED format

bruteforcealgorithms

A collection of scripts for the Does[0]Compute? session on brute force algorithms

exdata

Document Code for Generating Datasets

exoutbench

This package provides some tools for bench-marking the performance of expression outlier calling methods.

freesnpcalls

Pipeline for calling SNPs with Freebayes

ggseurat

Methods to allow Seurat objects to be visualized with ggplot2

kourami

Kourami: Graph-guided assembly for HLA alleles

loomr

An R-based interface for loom files

mamisc

mojaveazure

mojaveazure.r-universe.dev

ngsf

Estimation of per-individual inbreeding coefficients under a probabilistic framework

pbmc3k-sce

pseudoscaffold_annotator

A Python package for creating an annotation file for a pseudoscaffold

remotes

Install R packages from GitHub, GitLab, Bitbucket, git, svn repositories, URLs

seurat-disk

Interfaces for HDF5-based Single Cell File Formats

snp_utils

Extract SNP positions from BLAST XML and SAM formats

snptoseq

Capture contextual sequences for a SNP

utilities

A repository full of bioinformatics-related utilities

Recommend Projects

React

A declarative, efficient, and flexible JavaScript library for building user interfaces.
Vue.js

🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript

TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
TensorFlow

An Open Source Machine Learning Framework for Everyone
Django

The Web framework for perfectionists with deadlines.
Laravel

A PHP framework for web artisans
D3

Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

javascript

JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
web

Some thing interesting about web. New door for the world.
server

A server is a program made to process requests and deliver data to clients.
Machine learning

Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Visualization

Some thing interesting about visualization, use data art
Game

Some thing interesting about game, make everyone happy.

Recommend Org

Facebook

We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft

Open source projects and samples from Microsoft.
Google

Google ❤️ Open Source for everyone.
Alibaba

Alibaba Open Source for everyone
D3

Data-Driven Documents codes.
Tencent

China tencent open source team.