modelseed / mfatoolkit Goto Github PK
View Code? Open in Web Editor NEWA toolkit for performing flux balance analysis, reaction network analysis, biochemical analysis, and biochemical property prediction
A toolkit for performing flux balance analysis, reaction network analysis, biochemical analysis, and biochemical property prediction
Is there any documentation for this software?
A minor issue - the configuration complains if MFATK_BIN is not set:
MFATK_BIN configuration is undefined!
This is the directory that contains the mfatoolkit binary. If it
is not already installed, this program can be downloaded from:
https://github.com/modelseed/mfatoolkit
Add the binary directory to your path or use the following command:
$ ms config MFATK_BIN=VALUE
However, this should be set to the path to the executable not the directory that contains it.
I keep getting this error when running FBA/gapfilling:
'mkdir: cannot create directory `/tmp/fbajobs/nMekMbBbJ5/MFAOutput': File exists'
It's not a serious error, but it's a bit misleading, would be nice if we could fix it.
We should use standard tools for configuring/installing MFAToolkit.
Right now to compile MFAToolkit from a locally installed glpk, here are the commands:
INC="-I/homes/pfrybar/public_html/msdist/test/local/include -L/homes/pfrybar/public_html/msdist/test/local/lib" LD_RUN_PATH=/homes/pfrybar/public_html/msdist/test/local/lib make
TARGET=/homes/pfrybar/public_html/msdist/test/local/ make deploy-mfatoolkit
If we do this correctly then all we have to do is:
./configure --prefix=/homes/pfrybar/public_html/msdist/test/local
make
make install
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.