mmesbahu Goto Github PK

2015

Public material for CS109

acstats

A template for creating Amherst College senior theses and comps projects using R and Markdown.

ads1-hw-examples

How some homework solutions should work on some small examples

allelefrequencyapp

Allele frequency filter app

api-client-r

Provides a simple R script that transforms API query results into GAlignments.

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2018

appliedgenomics

JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

awesome-r

A curated list of awesome R packages, frameworks and software.

backgroundexperimentyeast

Gene expression experiment to measure NSB and optical noise in yeast

bam-readcount

count DNA sequence reads in BAM files

batchjobs

BatchJobs: Batch computing with R

bayes.glmm

R package: bayes-glmm

bayeslmmtutorial

Tutorial files to accompany Sorensen, Hohenstein, and Vasishth paper: http://www.ling.uni-potsdam.de/~vasishth/statistics/BayesLMMs.html

bayesr

Bayesian hierarchical model for complex trait analysis

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bda_m_demos

Bayesian Data Analysis demos for Matlab/Octave

bda_py_demos

Bayesian Data Analysis demos for Python

bda_r_demos

Bayesian Data Analysis demos for R

bedops

:microscope: BEDOPS: high-performance genomic feature operations

bedtools2

A powerful toolset for genome arithmetic.

benchmark-webservice

This repository contains the codebase that runs the webservice to benchmark orthology predictions on a common reference proteome dataset.

bglr.jl

bigquery-examples

Example BigQuery integrations. Includes both sql and R wrappers.

blupf90

Random stuff for BLUPF90 programs

bookdown

Authoring Books and Technical Documents with R Markdown

bowtie-scaling

Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"

boxplotr.shiny

shiny application to generate box plots with R

bpipe

Bpipe - a tool for running and managing bioinformatics pipelines

breakdancer

SV detection from paired end reads mapping

c-cpp-notes

Lecture notes and example code for teaching C & C++