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rcca's Introduction

rcca

An R package for Sparse Canonical Correlation Analysis (CCA).

An implementation of the sparse CCA method proposed by Suo et al. (2017) extended to produce multiple canonical vector pairs (Rodosthenous et al 2020).

Installation

With devtools

library(devtools)
devtools::install_github("mkomod/rcca")

From source

$ git clone https://github.com/mkomod/rcca
$ R CMD build rcca
$ R CMD INSTALL rcca_0.0.0.9000.tar.gz

Note: the version number _0.0.0.9000 might be different

References

Suo, X., Minden, V., Nelson, B., Tibshirani, R., & Saunders, M. (2017). Sparse canonical correlation analysis. Machine Learning, 83(3), 331–353. https://doi.org/10.1007/s10994-010-5222-7

Rodosthenous, T., Shahrezaei, V., & Evangelou, M. (2020). Integrating multi-OMICS data through sparse canonical correlation analysis for the prediction of complex traits: a comparison study. Bioinformatics, 36(17), 4616–4625. https://doi.org/10.1093/bioinformatics/btaa530

rcca's People

Contributors

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Watchers

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rcca's Issues

install problems

Hi~I failed to install this package, could you please help me ? Thanks!
My code:
library(devtools)
devtools::install_github("mkomod/rcca")
library("rcca")

and then it will give warning messages like:
Warning messages:
1: In file.copy(savedcopy, lib, recursive = TRUE) :
problem copying D:\Rlibrary\4.2\00LOCK\Rcpp\libs\x64\Rcpp.dll to D:\Rlibrary\4.2\Rcpp\libs\x64\Rcpp.dll: Permission denied
2: In i.p(...) :
installation of package ‘C:/Users/dingj/AppData/Local/Temp/RtmpoVz96w/file5dcc3b727ed5/rcca_0.0.0.9000.tar.gz’ had non-zero exit status

library("rcca")
Error in library("rcca") : there is no package called ‘rcca’

Could you please tell me how to solve this problem? Thanks a lot!

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