This Docker container is built upon the mingchen0919/docker-grreport

ls tool_yml_files > tool_installing_Dockerfile_commands.txt 

Open tool_installing_Dockerfile_commands.txt and run the following Regex jobs.

Step 1:

• Pattern: ^
• Replacement: ADD tool_yml_files/

Step 2:

• Pattern: (\d\d_.+yml)
• Replacement: \1 \$GALAXY_ROOT/tool_yml_files/\1\rRUN install-tools $GALAXY_ROOT/tool_yml_files/\1\r

This will generate Docker commands for installing each tools. Copy the content to the Dockerfile file.

docker build -t 'mingchen0919/docker-galaxy-grreport-dibbs' ./

docker run -i -t -p 8080:80 -p 8021:21 -p 8022:22  \
    -e "[email protected]" \
    mingchen0919/docker-galaxy-grreport-dibbs /bin/bash

docker run -i -t -p 8080:80 -p 8021:21 -p 8022:22  \
    -e "[email protected]" \
    -v /Users/mingchen/GoogleDrive/projects/docker/docker-galaxy-grreport-dibbs/map_to_docker_volume/:/galaxy-central/my_tools/ \
    mingchen0919/docker-galaxy-grreport-dibbs /bin/bash