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mipgen

One stop MIP design and analysis

mlcourse.ai

Open Machine Learning Course

pfirschke_et_al_2021

pf_variant_calling_pipeline

A bpipe pipeline for processing WGS from Plasmodium facliparum

proxyee-down

http下载工具，基于http代理，支持多连接分块下载

pyflow-atacseq

ATAC-seq snakemake pipeline

pyprobml

Python code for "Machine learning: a probabilistic perspective" (2nd edition)

pyscenic-test

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

pythonsift

A clean and concise Python implementation of SIFT (Scale-Invariant Feature Transform)

r-chip-data-analysis

r4ds

R for data science: a book

r4ds-exercise-solutions

Exercise solutions to "R for Data Science"

scc

Single-Cell Communication Toolkit

sccatch

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

scenicprotocol

A scalable SCENIC workflow for single-cell gene regulatory network analysis

scrnaseq-analysis-notes

my scRNAseq analysis notes

scrnaseqpipeline

scrna_smart_seq2

selftarget

Scripts for processing and predicting CRISPR/Cas9-generated mutations

seuratwizard

This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat.

shadowsocks

backup of https://github.com/shadowsocks/shadowsocks

shiny-apps

R Shiny apps

shinyjstutorials

tutorials materials on R/Shiny bindings to popular javascript libraries

single-cell-bioinformatics

Course material in notebook format for learning about single cell bioinformatics methods

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

singlecell-qtl

singlecelllineage

Updated scripts and pipelines for processing GESTALT data at single-cell resolution

singlecellseq

Batch effects and the effective design of single-cell gene expression studies

snakemake_darlin

tinyatlas

A tiny cell atlas for commonly sequenced organisms.