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molstar-pdb-to-mmcif's Introduction

Molstar PDB to mmCIF conversion

Testing out different Python packages for converting PDB files to mmCIF in order to determine which one is the most suitable for Molstar.

Short answer: so far none

How to run

Add the PDB files to the ./input folder and run the script.

# Install dependencies
$ python -m venv venv
$ source venv/bin/activate
$ pip install -r requirements.txt 

# Run the script
# by default it will convert all files in the ./input folder
$ python src/main.py 
# or you can specify the files you want to convert
$ python src/main.py 3BJ1.pdb ...

How to view in Molstar

Go to the Molstar viewer and upload all ./output/*.cif files.

molstar-pdb-to-mmcif's People

Contributors

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