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summarising outputs of samtools stats with ATAC-seq qc in mind
Not sure which columns should be extracted
Warning: Error in if: argument is of length zero
Stack trace (innermost first):
102: plotInsertSize [/home/mmigdal/Documents/sumsamstats/R/plots.R#10]
101: renderPlot [/home/mmigdal/Documents/sumsamstats/inst/sumsamstats/server.R#62]
91: reactive:plotObj
80: plotObj
79: origRenderFunc
78: output$insertSizePlot
2: shiny::runApp
1: sumsamstats::runExample [/home/mmigdal/Documents/sumsamstats/R/runExample.R#7]
Steps to reproduce:
Bad columns descriptions
when I try to install.packages("sumsamstats"), but it shows warnings "package ‘sumsamstats’ is not available (for R version 3.5.1)" , and I did not found the package in bioconductor, and I did not find any guide file.
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