maxlcummins / abricater Goto Github PK

No ColV hits detected
Rows: 106488 Columns: 15── Column specification ───────────────────────────────────────────────────────────────────────────────────────────────────────
Delimiter: "\t"
chr (11): name, SEQUENCE, STRAND, GENE, COVERAGE, COVERAGE_MAP, GAPS, DATABASE, ACCESSION, PRODUCT, RESISTANCE
dbl  (4): START, END, %COVERAGE, %IDENTITY
ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.The dcast generic in data.table has been passed a tbl_df and will attempt to redirect to the reshape2::dcast; please note that reshape2 is deprecated, and this redirection is now deprecated as well. Please do this redirection yourself like reshape2::dcast(df1). In the next version, this warning will become an error.Aggregation function missing: defaulting to length
Joining, by = "name"Combining pointfinder data...
Joining, by = "name"Combining ColV data...
Joining, by = "name"Combining pMLST data...
Files not written to disk; script finished.