To-do

• Modularize code: capture main sections of code into separate functions so we reduce duplication and it's easier to debug.
• Use library id instead of sample name. Balance between robustness and readability, check steps of code and know when to apply each.
• Update tutorial: config.py, run commands in an interactive node!
• Unit test config.py
• Recheck 3-test.py
• Assess code compliance with PEP8
• Snakemake?
• Add option in remove-files to potentially remove fastqs
• OR change cellranger count to aggr and provide paths
• Automatize split between cellranger classic/hashing