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Python batch scripts for running [planarrad] (http://www.planarrad.com/index.php?title=PlanarRad)

License: GNU General Public License v2.0

Python 98.74% Shell 0.18% Jupyter Notebook 0.55% Dockerfile 0.52%

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planarradpy's Issues

Need to check to see if a planarrad report exists in the directories and don't bother running it again if there is one.

Batch runs only seem to run if you put enough runs that all the CPUs are used. i.e min 4 on a 4 core machine

Loads are not ballanced very well

Some runs take longer than others. The code runs batches, and waits until all of the runs are complete before executing the next batch. If one run takes a long time it will hold up the computer from starting the next batch

Make a dependency pull script

Report files are put in the wrong place and just get over written

umm ... all the reflectances are the same, even though multiple parameters have been selected.

Not setting the wavelengths from batch.txt values are hardcoded and not overwritten

Not using directional AOP method results in error

'05/19/2015 09:35:53 PM' :: libplanarradpy :: WARNING :: Missing report file inbatch_report.txt
'05/19/2015 09:35:57 PM' :: libplanarradpy :: ERROR :: Parameter :: rrs :: Not in report
Traceback (most recent call last):
File "/home/marrabld/projects/rod_planarradpy/libplanarradpy/planrad.py", line 1129, in write_batch_report
if parameter_dir:
UnboundLocalError: local variable 'parameter_dir' referenced before assignment

How to set up the batch file, especially the Rrs / report parameter

I am totally new to planarrad, I have tried to run with a given batch parameter file provided by this website, but seems failed because I did not set up the "report_parameter=Rrs" correctly.

I have downloaded the code from official website and Github, and unzip the file to a folder.

then I run in a virtual environment:
python planarrad.py -i /home/usrname/Water_Model/planarradenv/planarradpy/inputs/batch_files/batch.txt

where the batch.txt is either from this release or copied and pasted from this given example.

and the output indicates there is something wrong with Rrs setting.

What is the right process to set up Planarrad? Do I need to run some setup.py, configure, or "*.run" file to set up the PlanarradPy? Or simply unzip to a folder?
- I debug using python tool, and notice it said cannot "import libplanarradpy.planrad"? but it seems not show an issue if I do not debug it.
How to set the Rrs correctly?

If I set the

# Set the parameter to report
#--------------------------------------------------#
report_parameter = Rrs

the log file says:

Process Process-1:
Traceback (most recent call last):
File "/usr/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
self.run()
File "/usr/lib/python2.7/multiprocessing/process.py", line 114, in run
self._target(_self._args, *_self._kwargs)
File "/home/usrname/Water_Model/planarradenv/planarradpy/libplanarradpy/planrad.py", line 632, in _run
run_dict = file_tools.read_param_file_to_dict(os.path.join(run_dir, 'batch.txt'))
File "/home/usrname/Water_Model/planarradenv/planarradpy/libplanarradpy/planrad.py", line 880, in read_param_file_to_dict
data = loadtxt(file_name, delimiter='=', dtype=scipy.string0)
File "/home/usrname/Water_Model/planarradenv/local/lib/python2.7/site-packages/numpy/lib/npyio.py", line 738, in loadtxt
fh = iter(open(fname, 'U'))
IOError: [Errno 20] Not a directory: '/home/usrname/Water_Model/planarradenv/planarradpy/outputs/DirectionalRrsTest/batch_report.txt/batch.txt'
'07/20/2015 12:31:28 PM' :: libplanarradpy :: INFO :: Starting processing block of :: 1 processes
'07/20/2015 12:31:28 PM' :: libplanarradpy :: DEBUG :: report.txt
'07/20/2015 12:31:28 PM' :: libplanarradpy :: DEBUG :: /home/usrname/Water_Model/planarradenv/planarradpy/outputs/DirectionalRrsTest/SAA90.0_SZA0.0_P0.01_X0.1_Y1.0_G0.1_S0.014_Z10.0/report.txt
'07/20/2015 12:31:28 PM' :: libplanarradpy :: DEBUG :: report size is :: 956
'07/20/2015 12:31:28 PM' :: libplanarradpy :: WARNING :: Report file found :: /home/usrname/Water_Model/planarradenv/planarradpy/outputs/DirectionalRrsTest/SAA90.0_SZA0.0_P0.01_X0.1_Y1.0_G0.1_S0.014_Z10.0/report.txt not redoing run
'07/20/2015 12:31:28 PM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 2779
'07/20/2015 12:31:28 PM' :: libplanarradpy :: DEBUG :: /home/usrname/Water_Model/planarradenv/planarradpy/outputs/DirectionalRrsTest/SAA90.0_SZA0.0_P0.01_X0.1_Y1.0_G0.1_S0.014_Z10.0
'07/20/2015 12:31:28 PM' :: libplanarradpy :: INFO :: Processing remainder
'07/20/2015 12:31:28 PM' :: libplanarradpy :: INFO :: Ending batch run at :: 0.117134
'07/20/2015 12:31:28 PM' :: libplanarradpy :: INFO :: Time taken ::0.0047
'07/20/2015 12:31:28 PM' :: libplanarradpy :: ERROR :: Parameter :: Rrs :: Not in report
Traceback (most recent call last):
File "/home/usrname/Water_Model/planarradenv/planarradpy/libplanarradpy/planrad.py", line 1108, in write_batch_report
param_val = report[parameter]
KeyError: 'Rrs'
'07/20/2015 12:31:28 PM' :: libplanarradpy :: ERROR :: Parameter :: Rrs :: Not in report
Traceback (most recent call last):
File "/home/usrname/Water_Model/planarradenv/planarradpy/libplanarradpy/planrad.py", line 1150, in write_batch_report
param_val = report[parameter]
KeyError: 'Rrs'

If I set the parameter as":
report_parameter = Rrs@16:45

Then the log file says:

Process Process-1:
Traceback (most recent call last):
File "/usr/lib/python2.7/multiprocessing/process.py", line 258, in _bootstrap
self.run()
File "/usr/lib/python2.7/multiprocessing/process.py", line 114, in run
self._target(_self._args, *_self._kwargs)
File "/home/usrname/Water_Model/planarradenv/planarradpy/libplanarradpy/planrad.py", line 632, in _run
run_dict = file_tools.read_param_file_to_dict(os.path.join(run_dir, 'batch.txt'))
File "/home/usrname/Water_Model/planarradenv/planarradpy/libplanarradpy/planrad.py", line 880, in read_param_file_to_dict
data = loadtxt(file_name, delimiter='=', dtype=scipy.string0)
File "/home/usrname/Water_Model/planarradenv/local/lib/python2.7/site-packages/numpy/lib/npyio.py", line 738, in loadtxt
fh = iter(open(fname, 'U'))
IOError: [Errno 20] Not a directory: '/home/usrname/Water_Model/planarradenv/planarradpy/outputs/DirectionalRrsTest/batch_report.txt/batch.txt'
'07/20/2015 12:38:17 PM' :: libplanarradpy :: INFO :: Starting processing block of :: 1 processes
'07/20/2015 12:38:17 PM' :: libplanarradpy :: DEBUG :: report.txt
'07/20/2015 12:38:17 PM' :: libplanarradpy :: DEBUG :: /home/usrname/Water_Model/planarradenv/planarradpy/outputs/DirectionalRrsTest/SAA90.0_SZA0.0_P0.01_X0.1_Y1.0_G0.1_S0.014_Z10.0/report.txt
'07/20/2015 12:38:17 PM' :: libplanarradpy :: DEBUG :: report size is :: 956
'07/20/2015 12:38:17 PM' :: libplanarradpy :: WARNING :: Report file found :: /home/usrname/Water_Model/planarradenv/planarradpy/outputs/DirectionalRrsTest/SAA90.0_SZA0.0_P0.01_X0.1_Y1.0_G0.1_S0.014_Z10.0/report.txt not redoing run
'07/20/2015 12:38:17 PM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 2882
'07/20/2015 12:38:17 PM' :: libplanarradpy :: DEBUG :: /home/usrname/Water_Model/planarradenv/planarradpy/outputs/DirectionalRrsTest/SAA90.0_SZA0.0_P0.01_X0.1_Y1.0_G0.1_S0.014_Z10.0
'07/20/2015 12:38:17 PM' :: libplanarradpy :: INFO :: Processing remainder
'07/20/2015 12:38:17 PM' :: libplanarradpy :: INFO :: Ending batch run at :: 0.079834
'07/20/2015 12:38:17 PM' :: libplanarradpy :: INFO :: Time taken ::0.003366
'07/20/2015 12:38:17 PM' :: libplanarradpy :: ERROR :: Parameter :: Rrs :: Not in report
Traceback (most recent call last):
File "/home/usrname/Water_Model/planarradenv/planarradpy/libplanarradpy/planrad.py", line 1108, in write_batch_report
param_val = report[parameter]
KeyError: 'Rrs'
'07/20/2015 12:38:17 PM' :: libplanarradpy :: DEBUG :: calculating the directional Rrs
'07/20/2015 12:38:17 PM' :: libplanarradpy :: ERROR :: Parameter :: Rrs :: Not in report
Traceback (most recent call last):
File "/home/usrname/Water_Model/planarradenv/planarradpy/libplanarradpy/planrad.py", line 1148, in write_batch_report
param_val = self.calc_directional_aop(report, parameter, parameter_dir)
File "/home/usrname/Water_Model/planarradenv/planarradpy/libplanarradpy/planrad.py", line 1009, in calc_directional_aop
tmp_zenith.append(report['Quad_solid_angle_mean_point_theta'][i_iter][:].split(',')[0]) #that was a pain!
KeyError: 'Quad_solid_angle_mean_point_theta'

Exec_path isn't updating correctly (Again! :-( )

'04/10/2014 11:20:20 AM' :: libplanarradpy :: ERROR :: Problem reading file :: /home/marrabld/projects/planarradpy/inputs/iop_files/a_phi.csv
None
'04/10/2014 11:20:20 AM' :: libplanarradpy :: ERROR :: Problem reading file :: /home/marrabld/projects/planarradpy/inputs/iop_files/a_phi.csv
Traceback (most recent call last):
File "/home/boulefi/PycharmProjects/planarradpy/libplanarradpy/planrad.py", line 344, in read_aphi_from_file
self.a_phi = self._read_iop_from_file(file_name)
File "/home/boulefi/PycharmProjects/planarradpy/libplanarradpy/planrad.py", line 396, in _read_iop_from_file
raise IOError
IOError

'04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: ============
'04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Initialising
'04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: ============
'04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Creating batch project directory
'04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Reading water absorption from file
'04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Reading :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/a_water.csv :: and interpolating to [[ 410. 430. 450. 470. 490. 510. 530. 550. 570. 590. 610. 630.

1. 1. 1. 730.]]
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Reading water scattering from file
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Reading :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_water.csv :: and interpolating to [[ 410. 430. 450. 470. 490. 510. 530. 550. 570. 590. 610. 630.
1. 1. 1. 730.]]
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Reading ahpi absorption
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Reading :: /home/marrabld/projects/planarradpy/inputs/iop_files/a_phi.csv :: and interpolating to [[ 410. 430. 450. 470. 490. 510. 530. 550. 570. 590. 610. 630.
1. 1. 1. 730.]]
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: ERROR :: Problem reading file :: /home/marrabld/projects/planarradpy/inputs/iop_files/a_phi.csv
      None
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: ERROR :: Problem reading file :: /home/marrabld/projects/planarradpy/inputs/iop_files/a_phi.csv
      Traceback (most recent call last):
      File "/home/boulefi/PycharmProjects/planarradpy/libplanarradpy/planrad.py", line 344, in read_aphi_from_file
      self.a_phi = self._read_iop_from_file(file_name)
      File "/home/boulefi/PycharmProjects/planarradpy/libplanarradpy/planrad.py", line 396, in _read_iop_from_file
      raise IOError
      IOError
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P0.5_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P0.5_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Creating run directory
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P0.5_X2.0_Y3.0_G4.0_S4.0_Z2.0/batch.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P1.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P1.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Creating run directory
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P1.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/batch.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P5.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P5.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Creating run directory
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P5.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/batch.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P10.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P10.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Creating run directory
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P10.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/batch.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Starting batch run at :: 0.2
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Found 2 CPUs
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Found 4 directories to process in /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Starting processing block of :: 2 processes
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P10.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 16426
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P0.5_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 16427
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Starting processing block of :: 2 processes
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P5.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 16444
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P1.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 16445
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Processing remainder
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Ending batch run at :: 0.2
      '04/10/2014 11:20:20 AM' :: libplanarradpy :: INFO :: Time taken ::0.0
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: ============
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Initialising
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: ============
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Reading water absorption from file
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Reading :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/a_water.csv :: and interpolating to [[ 410. 430. 450. 470. 490. 510. 530. 550. 570. 590. 610. 630.
1. 1. 1. 730.]]
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Reading water scattering from file
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Reading :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_water.csv :: and interpolating to [[ 410. 430. 450. 470. 490. 510. 530. 550. 570. 590. 610. 630.
1. 1. 1. 730.]]
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Reading ahpi absorption
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Reading :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/a_phi.csv :: and interpolating to [[ 410. 430. 450. 470. 490. 510. 530. 550. 570. 590. 610. 630.
1. 1. 1. 730.]]
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P0.5_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P0.5_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P1.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P1.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P5.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P5.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P10.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P10.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Starting batch run at :: 0.21
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Found 2 CPUs
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Found 4 directories to process in /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Starting processing block of :: 2 processes
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P10.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 17348
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P0.5_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 17349
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Starting processing block of :: 2 processes
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P5.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 17366
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P1.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 17367
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Processing remainder
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Ending batch run at :: 0.23
      '04/10/2014 11:38:11 AM' :: libplanarradpy :: INFO :: Time taken ::0.02
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: ============
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Initialising
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: ============
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Reading water absorption from file
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Reading :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/a_water.csv :: and interpolating to [[ 410. 430. 450. 470. 490. 510. 530. 550. 570. 590. 610. 630.
1. 1. 1. 730.]]
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Reading water scattering from file
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Reading :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_water.csv :: and interpolating to [[ 410. 430. 450. 470. 490. 510. 530. 550. 570. 590. 610. 630.
1. 1. 1. 730.]]
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Reading ahpi absorption
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Reading :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/a_phi.csv :: and interpolating to [[ 410. 430. 450. 470. 490. 510. 530. 550. 570. 590. 610. 630.
1. 1. 1. 730.]]
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P0.5_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P0.5_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P1.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P1.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P5.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P5.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P10.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P10.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Starting batch run at :: 0.17
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Found 2 CPUs
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Found 4 directories to process in /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Starting processing block of :: 2 processes
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P10.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 28673
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P0.5_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 28674
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Starting processing block of :: 2 processes
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P5.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 28691
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P1.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 28692
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Processing remainder
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Ending batch run at :: 0.19
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Time taken ::0.02
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 04:16:15 PM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: ============
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Initialising
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: ============
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Reading water absorption from file
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Reading :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/a_water.csv :: and interpolating to [[ 410. 430. 450. 470. 490. 510. 530. 550. 570. 590. 610. 630.
1. 1. 1. 730.]]
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Reading water scattering from file
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Reading :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_water.csv :: and interpolating to [[ 410. 430. 450. 470. 490. 510. 530. 550. 570. 590. 610. 630.
1. 1. 1. 730.]]
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Reading ahpi absorption
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Reading :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/a_phi.csv :: and interpolating to [[ 410. 430. 450. 470. 490. 510. 530. 550. 570. 590. 610. 630.
1. 1. 1. 730.]]
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P0.5_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P0.5_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P1.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P1.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P5.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P5.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building b_bp spectra
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: building CDOM absorption
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building all b and c from IOPs
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building total absorption
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building bb spectra
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building b with scattering fraction of :: 0.2
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Building total attenuation C
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/b_P10.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing :: /home/boulefi/PycharmProjects/planarradpy/inputs/iop_files/c_P10.0_X2.0_Y3.0_G4.0_S4.0_Z2.0
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Starting batch run at :: 0.11
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Found 2 CPUs
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Found 4 directories to process in /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Starting processing block of :: 2 processes
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P10.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 28758
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P0.5_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 28759
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Starting processing block of :: 2 processes
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P5.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 28771
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: report.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: /home/boulefi/PycharmProjects/planarradpy/outputs/unit_test_3/P1.0_X2.0_Y3.0_G4.0_S4.0_Z2.0/report.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No report file found, running process
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Starting Process :: Process ID :: 28772
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: !!!!!!!!!/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: Runing skytool!!!!! @ /home/marrabld/Apps/planarRad/bin/skytool_free#
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: DEBUG :: /home/marrabld/Apps/planarRad/bin/skytool_free params=/home/boulefi/PycharmProjects/planarradpy/inputs/sky_files/sky_clear_z45_a50_17_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No surf_tool generated file, generating one
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/surface_files/sf_coxmunk_w5_r10_s200_yes_mono_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Surface Type is :: flat
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: No sky_tool generated file, generating one
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Writing Inputs to file : /home/boulefi/PycharmProjects/planarradpy/inputs/phase_files/pf_petzold_mono_HL_18x24_params.txt
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Iop type is :: petzold
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Processing remainder
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Ending batch run at :: 0.13
      '04/10/2014 04:17:35 PM' :: libplanarradpy :: INFO :: Time taken ::0.02

Sky parameters aren't beeing updated sky_zenith and sky_azimuth.

The sky parameters files are getting the incorrect solar geometry

Should add ability to cycle through bottom types and phyto types.

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