A python matplotlib script to count stripes from microscopic images.

• Automatic detection of the scale length and scale value
• Display of the microscopic image with a grayscale color map
• Control of the contrast and the brightness of the image
• Definition of a profil line from mouse double clicks
• The profil line can be redefined, moved by picking the line or its bounds
• Extraction of the profil
• Smoothing (convolution) from a variable length kernel
• Detection of the number of the peaks (number of stripes)
• Growth rate display

Help: h
Contrast control: +/=
Brightness control: b/B
PeakUtils - Minimum distance control: z/Z
PeakUtils - Threshold control: e/E
Kernel size control: o/O
Save: S