Repositry containing code for Fc receptor polymorphisms and susceptibility to enteric fever project. GWAS performed using PLINK in command line following imputation, with downstream analysis and visualisation using R. Transcriptomics analysis utilises CibersortX used to deconvolute cellular gene expression and the matrix-eQTL package in R. (Code being actively edited)
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View Code? Open in Web Editor NEWScripts for analysis of Fc receptor polymorphisms