When creating a RMarkdown document with the following, standard yaml everything works out well and a pdf is produced.
---
title: "Failed Test"
output:
pdf_document: default
html_document: default
---
This is going to workIf the text contains just one markdown markup like # for making a title:
---
title: "Failed Test"
output:
pdf_document: default
html_document: default
---
# This is not going to workthe following error message is given without further compilation.
knitr::include_graphics(here('pics', 'Fehlermeldung.png'))
The error message may vary a bit but is often of the type !undefined control sequence.
The log file looks like
This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdflatex 2020.12.10) 15 DEC 2020 18:42
entering extended mode
restricted \write18 enabled.
%&-line parsing enabled.
**NB_one.tex
(./NB_one.tex
LaTeX2e <2020-10-01> patch level 2
L3 programming layer <2020-12-07> xparse <2020-03-03> (/Users/Martin/Library/Ti
nyTeX/texmf-dist/tex/latex/base/minimal.cls
Document Class: minimal 2001/05/25 Standard LaTeX minimal class
)
(/Users/Martin/Library/TinyTeX/texmf-dist/tex/latex/l3backend/l3backend-pdftex.
def
File: l3backend-pdftex.def 2020-09-24 L3 backend support: PDF output (pdfTeX)
\l__kernel_color_stack_int=\count177
\l__pdf_internal_box=\box47
)
No file NB_one.aux.
\openout1 = `NB_one.aux'.
LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 2.
LaTeX Font Info: ... okay on input line 2.
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 2.
LaTeX Font Info: ... okay on input line 2.
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 2.
LaTeX Font Info: ... okay on input line 2.
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 2.
LaTeX Font Info: ... okay on input line 2.
LaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 2.
LaTeX Font Info: ... okay on input line 2.
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 2.
LaTeX Font Info: ... okay on input line 2.
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 2.
LaTeX Font Info: ... okay on input line 2.
! Undefined control sequence.
l.4 \hypertarget
{this-is-not-going-to-work}{%
Here is how much of TeX's memory you used:
192 strings out of 481331
5031 string characters out of 5917010
264796 words of memory out of 5000000
17145 multiletter control sequences out of 15000+600000
403430 words of font info for 27 fonts, out of 8000000 for 9000
14 hyphenation exceptions out of 8191
38i,0n,46p,127b,38s stack positions out of 5000i,500n,10000p,200000b,80000s
! ==> Fatal error occurred, no output PDF file produced!I have done all proposed changes I could find:
- reinstall
tinytexwith all the miracles oftinytex::install_tinytex()and closing and opening RStudio - deleted MacTex with Latexit and TexShop
- re-installed it again
- updated ALL latex-packages
- I have made a tex.file with adding
keep_tex=trueout of the Rmd.file and tried to compile this in TexShop. - I have made the same with with an md.file and tried to compile via pandoc with
pandoc text.md -s -o text.pdfwithout any succes. It led to the same error message as from RStudio. - I upgraded pandoc from something like 2.5 to now 2.11.2 without any success.
- After recognizing that the upgrade of pandoc initially did not lead the system to find the right version, I found out that there was a Haskell pandoc version, which I deleted. The new version could then be found via terminal
pandoc --versionand in RStudio withrmarkdown::pandoc_version(). - I followed all the recommendations Yihui gave
- I posted a question in RCommunity without any reply
- All relevant R-packages were updated
At latest here I was thinking about the pandoc-template as a possible source of the problem. And I found this talk.macpoweruser
and this StackExchange
I downloaded this new template , stored in the directory where .Rmd was with the name mytemp.tex and changed my yaml to:
---
output:
pdf_document:
template: mytemp.tex
html_document:
df_print: paged
---That worked!
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