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alphaflow

AlphaFold Meets Flow Matching for Generating Protein Ensembles

dpu

Data Processing Unit for eVOLVER

eagerpy

PyTorch, TensorFlow, JAX and NumPy — all of them natively using the same code

evolver

evolver-arduino

Arduino code for the eVOLVER continuous cell culture framework

evolver-electron

evolvercli

A Command-Line Interface for the eVOLVER Continuous Culture Framework

fast-nw-and-sw-pairwise-alignment-using-numba-jit

This project includes Needleman-Wunsch and Smith-Waterman algorithms and their afine gap variations (Gotoh) written to work with Cython, PyPy and Numba. Numba JIT shows greater performance. For Best performance use gotoh_jit.py to get only the best score and use gotoh_jit_traceback to get the best alignment

hardware

eVOLVER Hardware (PCB, 3D printed parts)

iterative_masking

Iterative masking algorithm on MSA Transformer to generate synthetic sequences

mlde

A machine-learning package for navigating combinatorial protein fitness landscapes.

protein_scoring

Generating and scoring novel enzyme sequences with a variety of models and metrics

pylabrobot

A hardware agnostic interface and developer ecosystem for lab automation