maraxen Goto Github PK
Name: Marielle Russo
Type: User
Company: MIT
Bio: Graduate student at MIT researching evolution using liquid-handling robots
Location: Cambridge, MA
Marielle Russo's Projects
dpu
Data Processing Unit for eVOLVER
eagerpy
PyTorch, TensorFlow, JAX and NumPy — all of them natively using the same code
evolver
evolver-arduino
Arduino code for the eVOLVER continuous cell culture framework
evolver-electron
evolvercli
A Command-Line Interface for the eVOLVER Continuous Culture Framework
fast-nw-and-sw-pairwise-alignment-using-numba-jit
This project includes Needleman-Wunsch and Smith-Waterman algorithms and their afine gap variations (Gotoh) written to work with Cython, PyPy and Numba. Numba JIT shows greater performance. For Best performance use gotoh_jit.py to get only the best score and use gotoh_jit_traceback to get the best alignment
hardware
eVOLVER Hardware (PCB, 3D printed parts)
mlde
A machine-learning package for navigating combinatorial protein fitness landscapes.
pylabrobot
A hardware agnostic interface and developer ecosystem for lab automation
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