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radiomics-2's Introduction

Radiomics

一个切割肺结节数据的小工具

1.肺结节数据来源为公开数据集

https://wiki.cancerimagingarchive.net/display/Public/LIDC-IDRI#f89bac21cfe947749d5143843535089e

2.功能

上面的数据集包含1000+患者的肺结节数据,以DICOM文件存储,有CT、DX两种模型。此外,在每个序列(CT/DX)中都有一个XML文件. 在CT序列中的XML文件里存放着这个属于这个序列的肺结节定位信息。我们做的就是利用定位信息找到并切出对应肺结节的图像。利用 这个数据集,按保守估计,可以切出一万张以上肺结节数据。
作为该项目的另一部分,在切出图像之后,我们利用TensorFlow作了简单实验,然而效果并不理想,我们作了一些总结,你可以在这基础上开展自己的工作。

3.使用的工具

3.1语言 PYTHON 3.6.1

3.2处理DICOME文件 SimpleITK

3.3处理XML文件 minidom

4.参考

【1】simpleITK官网
http://www.simpleitk.org/SimpleITK/help/documentation.html

【2】simeleITK notebooks
http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/

【3】python下解析xml
http://www.runoob.com/python/python-xml.html

【4】minidom的一些用法
http://www.cnblogs.com/fnng/p/3581433.html

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