This is the code repository for the manuscript: Kuppe*, Ibrahim* et al. 2020.
For information on the methods and data files, please consult the manuscript methods section.
Hi,
I have trouble with mapping samples to patients.
In the supp.table1, patients are labeled as '1 (CD10+/-)', '2 (CD10+/-)', etc. In the scRNA-seq count matrix, samples are labeled as 'CDp1','CDp2','CDm1',etc. Could you provide a sample-patient mapping table, or do we miss something in your original publication? Your help is much appreciated!
Many thanks in advanced.
Chenxi
As mentioned in your paper, the data can be accessed at https://zenodo.org/record/4059315, and I have downloaded the Human_CD10negative.tar.gz and Human_CD10plus.tar.gz files. The column data contains patient IDs, such as CDm1 and CDp1. I would like to understand the naming convention used for these IDs and how they correspond to the Sample Name in Table 1 (Clinical and pathological data). My aim is to associate the single-cell data with the patients' eGFR, but the current information seems insufficient for achieving this goal.
I would greatly appreciate it if you could help clarify my confusion. Thank you very much for your assistance!
Hi, I downloaded the Human_PDGFRb.tar.gz file from https://zenodo.org/record/4059315#.ZFjxXi8RqSU. However, I can't seem to find the barcodes for this data anywhere. Was wondering if it's contained somewhere else or isn't there.
Thank you very much for your assistance!
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