Lovro Vrček's Projects
My Advent of Code 2020 solutions in Python
My Advent of Code 2021 solutions in C++
Awesome AI Learning with +100 AI Cheat-Sheets, Free online Books, Top Courses, Best Videos and Lectures, Papers, Tutorials, +99 Researchers, Premium Websites, +121 Datasets, Conferences, Frameworks, Tools
Some basic functions for creating assembly graphs in the DGL format
A collection of awesome resources related to the yearly Advent of Code challenge.
Bioinformatics project - Cuckoo filter
List of papers studying machine learning through the lens of category theory
Python package built to ease deep learning on graph, on top of existing DL frameworks.
De novo assembler for single molecule sequencing reads using repeat graphs
Learning to untangle genome assembly with graph neural networks.
A simulator for PacBio HiFi reads
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Markdown-based documentation website - IGV desktop application
A toy mapper for genomic sequences. Code in C++.
Deep learning model for classifying reads in de novo genome assembly.
Joint Face Detection and Alignment using Multi-task Cascaded Convolutional Networks
A GNN model that executes simplification algorithms used in the layout phase of de novo genome assembly process.
Qualia2.0 is a deep learning framework deeply integrated with automatic differentiation and dynamic graphing with CUDA acceleration. Qualia2.0 was built from scratch with pure python3 code.
De novo genome assembler for long uncorrected reads
python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.