Language-agnostic RESTful API for Cytoscape

We need your support to make this project sustainable. Please cite the following paper when you use cyREST in your projects:

Ono, Keiichiro, et al. CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API. F1000Research 4 (2015).

From Cytoscape 3.3.0, cyREST is a Core App:

• You don't have to install cyREST manually. It is a part of core distribution
• Although it is part of core distribution, you will get updates after 3.3.0 release

An app to control Cytoscape from RStudio, Jupyter Notebook, Node.js or other programming languages.

• Java 8
• Cytoscape 3.5.0+

• CyREST API docs are available within Cytoscape main menu through the Help → Automation sub-menu.
• cyREST Wiki

Please send your feature requests to our mailing list.

Please report the problems to our issue tracker:

• cyREST Issue Tracker

And of course, pull requests are always welcome!

• Source Code: The MIT license
• Documentation: CC BY-SA 4.0

© 2014-2016 Cytoscape Consortium.

Developed and maintained by Keiichiro Ono, UCSD Trey Ideker Lab.

Note to repository maintainers: Please *DO NOT* move this page ... the Cytoscape Automation paper refers directly to it.