Comments (2)
ericpre
commented on June 20, 2024
Indeed, this is related to numpy 1.24 and its incompatibility with numba. To be more precise, the issue is that numba (since version 0.54) has a "max pin" to numpy but a old version of numba without this pin is being installed along with the new version numpy. The dependency solver picks the "wrong" solution out of the two possible.
numba 0.53.1 py38h8b71fd7_1 conda-forge
numcodecs 0.11.0 py38h8dc9893_1 conda-forge
numexpr 2.8.3 py38h36ff5c2_101 conda-forge
numpy 1.24.1 py38hab0fcb9_0 conda-forge
Full environment
2023-01-04T19:23:49.0101859Z # packages in environment at /home/vsts/work/1/mambaforge/envs/test_env:
2023-01-04T19:23:49.0102275Z #
2023-01-04T19:23:49.0102589Z # Name Version Build Channel
2023-01-04T19:23:49.0116125Z _libgcc_mutex 0.1 conda_forge conda-forge
2023-01-04T19:23:49.0116927Z _openmp_mutex 4.5 2_gnu conda-forge
2023-01-04T19:23:49.0117562Z aom 3.5.0 h27087fc_0 conda-forge
2023-01-04T19:23:49.0118295Z appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
2023-01-04T19:23:49.0118826Z asciitree 0.3.3 py_2 conda-forge
2023-01-04T19:23:49.0119937Z asttokens 2.2.1 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0120590Z attrs 22.2.0 pyh71513ae_0 conda-forge
2023-01-04T19:23:49.0121150Z backcall 0.2.0 pyh9f0ad1d_0 conda-forge
2023-01-04T19:23:49.0121686Z backports 1.0 pyhd8ed1ab_3 conda-forge
2023-01-04T19:23:49.0122279Z backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0122879Z blosc 1.21.3 hafa529b_0 conda-forge
2023-01-04T19:23:49.0123425Z brotli 1.0.9 h166bdaf_8 conda-forge
2023-01-04T19:23:49.0124205Z brotli-bin 1.0.9 h166bdaf_8 conda-forge
2023-01-04T19:23:49.0124761Z brotlipy 0.7.0 py38h0a891b7_1005 conda-forge
2023-01-04T19:23:49.0125320Z brunsli 0.1 h9c3ff4c_0 conda-forge
2023-01-04T19:23:49.0125847Z bzip2 1.0.8 h7f98852_4 conda-forge
2023-01-04T19:23:49.0126412Z c-ares 1.18.1 h7f98852_0 conda-forge
2023-01-04T19:23:49.0126947Z c-blosc2 2.6.1 hf91038e_0 conda-forge
2023-01-04T19:23:49.0127514Z ca-certificates 2022.12.7 ha878542_0 conda-forge
2023-01-04T19:23:49.0128071Z cached-property 1.5.2 hd8ed1ab_1 conda-forge
2023-01-04T19:23:49.0128657Z cached_property 1.5.2 pyha770c72_1 conda-forge
2023-01-04T19:23:49.0129210Z certifi 2022.12.7 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0130768Z cffi 1.15.1 py38h4a40e3a_3 conda-forge
2023-01-04T19:23:49.0131417Z cfitsio 4.2.0 hd9d235c_0 conda-forge
2023-01-04T19:23:49.0131967Z charls 2.3.4 h9c3ff4c_0 conda-forge
2023-01-04T19:23:49.0132514Z charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0133089Z click 8.1.3 unix_pyhd8ed1ab_2 conda-forge
2023-01-04T19:23:49.0133636Z cloudpickle 2.2.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0134192Z colorama 0.4.6 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0134725Z comm 0.1.2 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0135568Z contourpy 1.0.6 py38h43d8883_0 conda-forge
2023-01-04T19:23:49.0136116Z coverage 7.0.3 py38h1de0b5d_0 conda-forge
2023-01-04T19:23:49.0136689Z cryptography 39.0.0 py38h3d167d9_0 conda-forge
2023-01-04T19:23:49.0137234Z cycler 0.11.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0137790Z cytoolz 0.12.0 py38h0a891b7_1 conda-forge
2023-01-04T19:23:49.0138355Z dask-core 2022.12.1 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0138895Z dav1d 1.0.0 h166bdaf_1 conda-forge
2023-01-04T19:23:49.0139445Z debugpy 1.6.4 py38hfa26641_0 conda-forge
2023-01-04T19:23:49.0139988Z decorator 5.1.1 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0140532Z dill 0.3.6 pyhd8ed1ab_1 conda-forge
2023-01-04T19:23:49.0141251Z entrypoints 0.4 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0144341Z exceptiongroup 1.1.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0144784Z execnet 1.9.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0145195Z executing 1.2.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0145626Z fasteners 0.17.3 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0146045Z fonttools 4.38.0 py38h0a891b7_1 conda-forge
2023-01-04T19:23:49.0146470Z freetype 2.12.1 hca18f0e_1 conda-forge
2023-01-04T19:23:49.0146886Z fsspec 2022.11.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0147305Z giflib 5.2.1 h36c2ea0_2 conda-forge
2023-01-04T19:23:49.0147703Z gmp 6.2.1 h58526e2_0 conda-forge
2023-01-04T19:23:49.0148115Z gmpy2 2.1.2 py38h793c122_1 conda-forge
2023-01-04T19:23:49.0148564Z h5py 3.7.0 nompi_py38h7927eab_102 conda-forge
2023-01-04T19:23:49.0149000Z hdf5 1.12.2 nompi_h4df4325_101 conda-forge
2023-01-04T19:23:49.0149446Z hyperspy-base 1.7.3 py38h0a891b7_0 conda-forge
2023-01-04T19:23:49.0149857Z idna 3.4 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0150292Z imagecodecs 2022.12.24 py38h7f61701_0 conda-forge
2023-01-04T19:23:49.0150716Z imageio 2.23.0 pyhfa7a67d_0 conda-forge
2023-01-04T19:23:49.0151154Z importlib-metadata 6.0.0 pyha770c72_0 conda-forge
2023-01-04T19:23:49.0151583Z importlib_metadata 6.0.0 hd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0152019Z iniconfig 1.1.1 pyh9f0ad1d_0 conda-forge
2023-01-04T19:23:49.0152441Z ipykernel 6.19.4 pyh210e3f2_0 conda-forge
2023-01-04T19:23:49.0152872Z ipyparallel 8.4.1 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0153286Z ipython 8.8.0 pyh41d4057_0 conda-forge
2023-01-04T19:23:49.0153705Z jedi 0.18.2 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0154109Z jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
2023-01-04T19:23:49.0154515Z jpeg 9e h166bdaf_2 conda-forge
2023-01-04T19:23:49.0154920Z jupyter_client 7.4.8 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0155357Z jupyter_core 5.1.2 py38h578d9bd_0 conda-forge
2023-01-04T19:23:49.0155770Z jxrlib 1.1 h7f98852_2 conda-forge
2023-01-04T19:23:49.0156168Z keyutils 1.6.1 h166bdaf_0 conda-forge
2023-01-04T19:23:49.0156707Z kiwisolver 1.4.4 py38h43d8883_1 conda-forge
2023-01-04T19:23:49.0157117Z krb5 1.20.1 h81ceb04_0 conda-forge
2023-01-04T19:23:49.0157527Z lcms2 2.14 hfd0df8a_1 conda-forge
2023-01-04T19:23:49.0157935Z ld_impl_linux-64 2.39 hcc3a1bd_1 conda-forge
2023-01-04T19:23:49.0158360Z lerc 4.0.0 h27087fc_0 conda-forge
2023-01-04T19:23:49.0158756Z libaec 1.0.6 h9c3ff4c_0 conda-forge
2023-01-04T19:23:49.0159170Z libavif 0.11.1 h5cdd6b5_0 conda-forge
2023-01-04T19:23:49.0159590Z libblas 3.9.0 16_linux64_openblas conda-forge
2023-01-04T19:23:49.0160032Z libbrotlicommon 1.0.9 h166bdaf_8 conda-forge
2023-01-04T19:23:49.0160789Z libbrotlidec 1.0.9 h166bdaf_8 conda-forge
2023-01-04T19:23:49.0161328Z libbrotlienc 1.0.9 h166bdaf_8 conda-forge
2023-01-04T19:23:49.0161756Z libcblas 3.9.0 16_linux64_openblas conda-forge
2023-01-04T19:23:49.0162188Z libcurl 7.87.0 hdc1c0ab_0 conda-forge
2023-01-04T19:23:49.0162593Z libdeflate 1.14 h166bdaf_0 conda-forge
2023-01-04T19:23:49.0163021Z libedit 3.1.20191231 he28a2e2_2 conda-forge
2023-01-04T19:23:49.0163429Z libev 4.33 h516909a_1 conda-forge
2023-01-04T19:23:49.0163841Z libffi 3.4.2 h7f98852_5 conda-forge
2023-01-04T19:23:49.0164250Z libgcc-ng 12.2.0 h65d4601_19 conda-forge
2023-01-04T19:23:49.0164685Z libgfortran-ng 12.2.0 h69a702a_19 conda-forge
2023-01-04T19:23:49.0165108Z libgfortran5 12.2.0 h337968e_19 conda-forge
2023-01-04T19:23:49.0165531Z libgomp 12.2.0 h65d4601_19 conda-forge
2023-01-04T19:23:49.0165960Z libjpeg-turbo 2.1.4 h166bdaf_0 conda-forge
2023-01-04T19:23:49.0166389Z liblapack 3.9.0 16_linux64_openblas conda-forge
2023-01-04T19:23:49.0166826Z libllvm10 10.0.1 he513fc3_3 conda-forge
2023-01-04T19:23:49.0167240Z libnghttp2 1.51.0 hff17c54_0 conda-forge
2023-01-04T19:23:49.0167661Z libnsl 2.0.0 h7f98852_0 conda-forge
2023-01-04T19:23:49.0168087Z libopenblas 0.3.21 pthreads_h78a6416_3 conda-forge
2023-01-04T19:23:49.0168526Z libpng 1.6.39 h753d276_0 conda-forge
2023-01-04T19:23:49.0168933Z libsodium 1.0.18 h36c2ea0_1 conda-forge
2023-01-04T19:23:49.0169361Z libsqlite 3.40.0 h753d276_0 conda-forge
2023-01-04T19:23:49.0169780Z libssh2 1.10.0 hf14f497_3 conda-forge
2023-01-04T19:23:49.0170209Z libstdcxx-ng 12.2.0 h46fd767_19 conda-forge
2023-01-04T19:23:49.0170617Z libtiff 4.5.0 h82bc61c_0 conda-forge
2023-01-04T19:23:49.0171039Z libuuid 2.32.1 h7f98852_1000 conda-forge
2023-01-04T19:23:49.0171453Z libwebp-base 1.2.4 h166bdaf_0 conda-forge
2023-01-04T19:23:49.0171882Z libxcb 1.13 h7f98852_1004 conda-forge
2023-01-04T19:23:49.0172287Z libzlib 1.2.13 h166bdaf_4 conda-forge
2023-01-04T19:23:49.0172707Z libzopfli 1.0.3 h9c3ff4c_0 conda-forge
2023-01-04T19:23:49.0173120Z llvmlite 0.36.0 py38h4630a5e_0 conda-forge
2023-01-04T19:23:49.0173532Z locket 1.0.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0174021Z lz4-c 1.9.3 h9c3ff4c_1 conda-forge
2023-01-04T19:23:49.0174432Z markupsafe 2.1.1 py38h0a891b7_2 conda-forge
2023-01-04T19:23:49.0174876Z matplotlib-base 3.6.2 py38hb021067_0 conda-forge
2023-01-04T19:23:49.0175311Z matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0175744Z mpc 1.2.1 h9f54685_0 conda-forge
2023-01-04T19:23:49.0176137Z mpfr 4.1.0 h9202a9a_1 conda-forge
2023-01-04T19:23:49.0176551Z mpmath 1.2.1 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0176972Z msgpack-python 1.0.4 py38h43d8883_1 conda-forge
2023-01-04T19:23:49.0177406Z munkres 1.1.4 pyh9f0ad1d_0 conda-forge
2023-01-04T19:23:49.0177813Z natsort 8.2.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0178299Z ncurses 6.3 h27087fc_1 conda-forge
2023-01-04T19:23:49.0178706Z nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0179137Z networkx 2.8.8 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0179537Z nomkl 1.0 h5ca1d4c_0 conda-forge
2023-01-04T19:23:49.0179955Z numba 0.53.1 py38h8b71fd7_1 conda-forge
2023-01-04T19:23:49.0180373Z numcodecs 0.11.0 py38h8dc9893_1 conda-forge
2023-01-04T19:23:49.0180811Z numexpr 2.8.3 py38h36ff5c2_101 conda-forge
2023-01-04T19:23:49.0181227Z numpy 1.24.1 py38hab0fcb9_0 conda-forge
2023-01-04T19:23:49.0181633Z openjpeg 2.5.0 hfec8fc6_2 conda-forge
2023-01-04T19:23:49.0182051Z openssl 3.0.7 h0b41bf4_1 conda-forge
2023-01-04T19:23:49.0182460Z packaging 22.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0182881Z parso 0.8.3 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0183280Z partd 1.3.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0183736Z pexpect 4.8.0 pyh1a96a4e_2 conda-forge
2023-01-04T19:23:49.0184145Z pickleshare 0.7.5 py_1003 conda-forge
2023-01-04T19:23:49.0184569Z pillow 9.4.0 py38hb32c036_0 conda-forge
2023-01-04T19:23:49.0184974Z pint 0.20.1 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0185386Z pip 22.3.1 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0185792Z platformdirs 2.6.2 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0186217Z pluggy 1.0.0 pyhd8ed1ab_5 conda-forge
2023-01-04T19:23:49.0186627Z pooch 1.6.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0187052Z prettytable 3.5.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0187478Z prompt-toolkit 3.0.36 pyha770c72_0 conda-forge
2023-01-04T19:23:49.0187912Z psutil 5.9.4 py38h0a891b7_0 conda-forge
2023-01-04T19:23:49.0188334Z pthread-stubs 0.4 h36c2ea0_1001 conda-forge
2023-01-04T19:23:49.0188769Z ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
2023-01-04T19:23:49.0189184Z pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0189594Z pycparser 2.21 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0190021Z pygments 2.14.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0190435Z pyopenssl 23.0.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0190942Z pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0191352Z pysocks 1.7.1 pyha2e5f31_6 conda-forge
2023-01-04T19:23:49.0191773Z pytest 7.2.0 pyhd8ed1ab_2 conda-forge
2023-01-04T19:23:49.0192181Z pytest-cov 4.0.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0192613Z pytest-faulthandler 2.0.1 py_0 conda-forge
2023-01-04T19:23:49.0193031Z pytest-xdist 3.1.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0193475Z python 3.8.15 h4a9ceb5_0_cpython conda-forge
2023-01-04T19:23:49.0193906Z python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0194334Z python_abi 3.8 3_cp38 conda-forge
2023-01-04T19:23:49.0194742Z pywavelets 1.3.0 py38h26c90d9_2 conda-forge
2023-01-04T19:23:49.0195239Z pyyaml 6.0 py38h0a891b7_5 conda-forge
2023-01-04T19:23:49.0195648Z pyzmq 24.0.1 py38hfc09fa9_1 conda-forge
2023-01-04T19:23:49.0196068Z readline 8.1.2 h0f457ee_0 conda-forge
2023-01-04T19:23:49.0196477Z requests 2.28.1 pyhd8ed1ab_1 conda-forge
2023-01-04T19:23:49.0196912Z scikit-image 0.19.3 py38h8f669ce_2 conda-forge
2023-01-04T19:23:49.0197336Z scipy 1.10.0 py38h10c12cc_0 conda-forge
2023-01-04T19:23:49.0197750Z setuptools 65.6.3 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0198176Z six 1.16.0 pyh6c4a22f_0 conda-forge
2023-01-04T19:23:49.0198576Z snappy 1.1.9 hbd366e4_2 conda-forge
2023-01-04T19:23:49.0198995Z sparse 0.13.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0199415Z stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0199844Z sympy 1.11.1 py38h578d9bd_2 conda-forge
2023-01-04T19:23:49.0200356Z tifffile 2022.10.10 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0200788Z tk 8.6.12 h27826a3_0 conda-forge
2023-01-04T19:23:49.0201181Z toml 0.10.2 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0201600Z tomli 2.0.1 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0202002Z toolz 0.12.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0202424Z tornado 6.2 py38h0a891b7_1 conda-forge
2023-01-04T19:23:49.0202829Z tqdm 4.64.1 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0203253Z traitlets 5.8.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0203674Z traits 6.4.1 py38h0a891b7_1 conda-forge
2023-01-04T19:23:49.0204104Z typing-extensions 4.4.0 hd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0204536Z typing_extensions 4.4.0 pyha770c72_0 conda-forge
2023-01-04T19:23:49.0204985Z unicodedata2 15.0.0 py38h0a891b7_0 conda-forge
2023-01-04T19:23:49.0205408Z urllib3 1.26.13 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0205820Z wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
2023-01-04T19:23:49.0206240Z wheel 0.38.4 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0206646Z xorg-libxau 1.0.9 h7f98852_0 conda-forge
2023-01-04T19:23:49.0207077Z xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
2023-01-04T19:23:49.0207479Z xz 5.2.6 h166bdaf_0 conda-forge
2023-01-04T19:23:49.0207977Z yaml 0.2.5 h7f98852_2 conda-forge
2023-01-04T19:23:49.0208376Z zarr 2.13.3 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0208788Z zeromq 4.3.4 h9c3ff4c_1 conda-forge
2023-01-04T19:23:49.0209185Z zfp 1.0.0 h27087fc_3 conda-forge
2023-01-04T19:23:49.0209596Z zipp 3.11.0 pyhd8ed1ab_0 conda-forge
2023-01-04T19:23:49.0209994Z zlib 1.2.13 h166bdaf_4 conda-forge
2023-01-04T19:23:49.0210407Z zlib-ng 2.0.6 h166bdaf_0 conda-forge
2023-01-04T19:23:49.0210805Z zstd 1.5.2 h6239696_4 conda-forge
This can currently be reproduced with:
mamba install numpy numba
and it should be fixed by conda-forge/conda-forge-repodata-patches-feedstock#376.
from lumispy.
ericpre
commented on June 20, 2024
This is now fixed - see re-run CI of the last commit on main: https://github.com/LumiSpy/lumispy/runs/10461455605
from lumispy.
Related Issues (20)
- Added Read the Docs support HOT 26
- Docstring formatting in RTD HOT 11
- Transient signal classes HOT 3
- LumiSpy v0.2 HOT 2
- Create a `remove_background_signal` function HOT 1
- Extend functionality of crop_edges HOT 3
- Implementation of Spectroscopy File Readers HOT 18
- Increase coverage HOT 2
- Webhook failing HOT 3
- Adding an interactive way to slice HS over a wavelength range, and view the result spatially! HOT 12
- Consolidate axis conversion codes
- Failure with numpy 1.24.dev
- Slicing of energy/wavenumber signal with isig fails
- Failure with numpy dev HOT 1
- Documentation is broken HOT 3
- Find maximum and width of a peak HOT 1
- Reminder: Change doc-links to sphinx
- Fix test for `remove_spikes` HOT 4
- Slicing TransientSpec HOT 22
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